Variant report

Variant	rs576081831
Chromosome Location	chr20:52884072-52884073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:52720871..52722915-chr20:52882468..52884514,2	MCF-7	breast:
2	chr20:52867284..52867978-chr20:52883331..52884092,2	MCF-7	breast:
3	chr20:52883883..52884584-chr20:53072904..53073597,2	MCF-7	breast:
4	chr20:52881988..52885819-chr20:52932723..52935221,3	MCF-7	breast:
5	chr20:52882962..52884659-chr20:53063631..53065695,2	MCF-7	breast:
6	chr20:52836483..52840611-chr20:52882316..52886295,8	MCF-7	breast:
7	chr20:52824429..52825065-chr20:52883808..52884537,2	MCF-7	breast:
8	chr20:52823148..52829420-chr20:52882441..52888238,13	MCF-7	breast:
9	chr20:52883328..52886194-chr20:52903780..52906080,2	MCF-7	breast:
10	chr20:52883800..52885374-chr20:52939481..52942023,2	MCF-7	breast:
11	chr20:52882880..52885132-chr3:63848475..63850239,2	MCF-7	breast:
12	chr20:52881900..52884717-chr20:52925408..52927187,2	MCF-7	breast:
13	chr20:52883714..52887393-chr20:53262850..53265125,5	MCF-7	breast:
14	chr20:52846960..52850669-chr20:52882090..52885757,4	MCF-7	breast:
15	chr15:65596894..65598661-chr20:52883990..52886001,2	MCF-7	breast:
16	chr20:52855219..52857176-chr20:52882201..52884210,2	MCF-7	breast:
17	chr20:52835744..52843522-chr20:52881395..52889377,15	MCF-7	breast:
18	chr20:52823141..52827110-chr20:52881540..52888271,10	MCF-7	breast:
19	chr20:52884063..52885700-chr20:53076206..53077738,2	MCF-7	breast:
20	chr20:52882722..52884267-chr20:53265302..53267025,2	MCF-7	breast:
21	chr20:52872714..52873402-chr20:52883465..52884136,2	MCF-7	breast:
22	chr19:38794163..38796010-chr20:52883229..52885168,2	MCF-7	breast:
23	chr20:52881899..52886453-chr20:53260602..53265051,8	MCF-7	breast:
24	chr20:52841965..52845171-chr20:52882309..52885405,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000101132	Chromatin interaction
ENSG00000167644	Chromatin interaction
ENSG00000163634	Chromatin interaction
ENSG00000200156	Chromatin interaction
ENSG00000163635	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv962638	chr20:52883415-52917517	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52881200-52885000	Weak transcription	Fetal Stomach	stomach
2	chr20:52882800-52884200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr20:52883200-52885000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr20:52883400-52884400	Enhancers	Esophagus	oesophagus
5	chr20:52883400-52884800	Enhancers	HMEC	breast
6	chr20:52883400-52885200	Enhancers	Ovary	ovary
7	chr20:52883400-52885400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr20:52883400-52885600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr20:52883400-52885600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr20:52883400-52885600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr20:52883400-52885600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr20:52883400-52885800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr20:52883400-52885800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr20:52883400-52885800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr20:52883400-52885800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr20:52883400-52885800	Enhancers	Placenta	Placenta
17	chr20:52883400-52886600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr20:52883600-52884200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr20:52883600-52884200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr20:52883600-52884400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr20:52883600-52884400	Enhancers	Hela-S3	cervix
22	chr20:52883600-52884600	Bivalent Enhancer	HepG2	liver
23	chr20:52883600-52884800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr20:52883600-52884800	Enhancers	Stomach Mucosa	stomach
25	chr20:52883600-52885000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr20:52883600-52885400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr20:52883600-52886000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr20:52883600-52886000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr20:52883600-52886200	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr20:52883600-52886200	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr20:52883800-52884400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr20:52883800-52884400	Enhancers	Pancreas	Pancrea
33	chr20:52883800-52884400	Enhancers	Osteobl	bone
34	chr20:52883800-52884600	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr20:52883800-52884600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr20:52883800-52884600	Enhancers	Aorta	Aorta
37	chr20:52883800-52884600	Enhancers	NH-A	brain
38	chr20:52883800-52884600	Enhancers	NHEK	skin
39	chr20:52883800-52884800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr20:52883800-52884800	Enhancers	HSMMtube	muscle
41	chr20:52883800-52886000	Enhancers	H1 Cell Line	embryonic stem cell
42	chr20:52883800-52886000	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr20:52884000-52884400	Enhancers	Muscle Satellite Cultured Cells	--
44	chr20:52884000-52884800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr20:52884000-52885000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr20:52884000-52885000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr20:52884000-52885000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr20:52884000-52886000	Enhancers	Fetal Lung	lung
49	chr20:52884000-52889400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links