Variant report

Variant	rs57610782
Chromosome Location	chr4:152984095-152984096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17028049	1.00[AMR][1000 genomes]
rs17028118	1.00[AMR][1000 genomes]
rs73865529	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv461679	chr4:152935555-152992741	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv595734	chr4:152935555-152992741	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152978800-152985000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:152981200-152984800	Weak transcription	Fetal Heart	heart
3	chr4:152981200-152985400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:152983000-152984200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:152983200-152985800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:152983600-152984200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:152983600-152985600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:152983800-152984800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:152983800-152984800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:152983800-152985400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr4:152983800-153000800	Enhancers	Fetal Thymus	thymus
12	chr4:152984000-152984400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr4:152984000-152986600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:152984000-152988000	Enhancers	Dnd41	blood
15	chr4:152984000-152988200	Enhancers	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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