Variant report

Variant	rs576120732
Chromosome Location	chr1:10310069-10310070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv999251	chr1:10276263-10318163	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv545381	chr1:10296452-10423988	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv545382	chr1:10309026-10377221	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10272600-10368200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:10276800-10311800	Weak transcription	Hela-S3	cervix
3	chr1:10277000-10322000	Weak transcription	Spleen	Spleen
4	chr1:10284800-10311000	Weak transcription	Small Intestine	intestine
5	chr1:10285200-10316000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:10285400-10310800	Weak transcription	Aorta	Aorta
7	chr1:10285400-10312600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:10287400-10312400	Weak transcription	Pancreas	Pancrea
9	chr1:10289200-10317400	Weak transcription	Liver	Liver
10	chr1:10291000-10311800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:10291000-10311800	Weak transcription	HMEC	breast
12	chr1:10291200-10311200	Weak transcription	HUVEC	blood vessel
13	chr1:10293000-10322000	Weak transcription	Primary T cells from cord blood	blood
14	chr1:10293600-10311400	Weak transcription	NH-A	brain
15	chr1:10295000-10310600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr1:10295400-10311400	Weak transcription	Osteobl	bone
17	chr1:10295600-10312000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:10295600-10316400	Weak transcription	Placenta	Placenta
19	chr1:10295600-10317600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:10295800-10322000	Weak transcription	Lung	lung
21	chr1:10296200-10312400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:10296200-10313600	Weak transcription	Fetal Brain Female	brain
23	chr1:10296400-10310600	Weak transcription	Fetal Muscle Leg	muscle
24	chr1:10296400-10312400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:10296400-10313200	Weak transcription	Fetal Stomach	stomach
26	chr1:10296400-10316800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr1:10297200-10316200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr1:10297200-10316200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr1:10297400-10310400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:10297400-10312400	Weak transcription	NHLF	lung
31	chr1:10297400-10316200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr1:10297600-10311200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr1:10297600-10311800	Weak transcription	HSMM	muscle
34	chr1:10297600-10311800	Weak transcription	NHDF-Ad	bronchial
35	chr1:10297600-10312400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:10297800-10312400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr1:10298000-10311400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr1:10298000-10312400	Weak transcription	HepG2	liver
39	chr1:10298400-10312400	Weak transcription	Right Atrium	heart
40	chr1:10299200-10311800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:10302000-10313200	Weak transcription	Fetal Heart	heart
42	chr1:10302000-10321800	Weak transcription	Esophagus	oesophagus
43	chr1:10302200-10313800	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr1:10302400-10312600	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr1:10302400-10315600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr1:10302600-10313200	Weak transcription	Fetal Kidney	kidney
47	chr1:10303200-10313400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr1:10303200-10316000	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr1:10303800-10310800	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr1:10304400-10311600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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