Variant report

Variant	rs576154526
Chromosome Location	chr15:92936966-92936967
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:92936271-92938347	H1-hESC	embryonic stem cell:	n/a	n/a
2	GABPA	chr15:92936744-92937020	H1-hESC	embryonic stem cell:	n/a	chr15:92936906-92936915
3	MAX	chr15:92936463-92938759	H1-hESC	embryonic stem cell:	n/a	chr15:92938512-92938521 chr15:92937667-92937677 chr15:92936907-92936917 chr15:92938011-92938021 chr15:92937571-92937581
4	SIN3A	chr15:92936277-92938776	H1-hESC	embryonic stem cell:	n/a	chr15:92936363-92936376 chr15:92936514-92936523 chr15:92938276-92938290 chr15:92938301-92938312 chr15:92937586-92937597 chr15:92936394-92936403
5	RAD21	chr15:92936492-92937068	H1-hESC	embryonic stem cell:	n/a	n/a
6	TAF1	chr15:92936640-92937191	H1-neurons	neurons:	n/a	n/a
7	TEAD4	chr15:92936782-92937216	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr15:92936762-92938175	H1-hESC	embryonic stem cell:	n/a	n/a
9	TAF1	chr15:92936425-92938207	H1-neurons	neurons:	n/a	n/a
10	RAD21	chr15:92936708-92937413	H1-hESC	embryonic stem cell:	n/a	n/a
11	ZNF143	chr15:92936441-92936990	H1-hESC	embryonic stem cell:	n/a	chr15:92936806-92936816
12	SIN3AK20	chr15:92936589-92937649	H1-hESC	embryonic stem cell:	n/a	n/a
13	TBP	chr15:92936667-92937426	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr15:92936633-92937252	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr15:92936799-92936978	H1-hESC	embryonic stem cell:	n/a	n/a
16	CREB1	chr15:92936565-92937698	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTBP2	chr15:92936285-92937466	H1-hESC	embryonic stem cell:	n/a	n/a
18	MAX	chr15:92936824-92937469	ECC-1	luminal epithelium:	n/a	chr15:92936907-92936917
19	TAF1	chr15:92936612-92937317	H1-hESC	embryonic stem cell:	n/a	n/a
20	MXI1	chr15:92936837-92937485	H1-hESC	embryonic stem cell:	n/a	n/a
21	MXI1	chr15:92936549-92939002	SK-N-SH	brain:	n/a	n/a
22	MAX	chr15:92936603-92937440	H1-hESC	embryonic stem cell:	n/a	chr15:92936907-92936917
23	REST	chr15:92936299-92939165	H1-neurons	neurons:	n/a	chr15:92936368-92936382 chr15:92938299-92938312 chr15:92937734-92937747 chr15:92939053-92939073 chr15:92936459-92936472 chr15:92938397-92938410 chr15:92937215-92937228 chr15:92936459-92936472
24	POLR2A	chr15:92936281-92938278	H1-neurons	neurons:	n/a	n/a
25	POLR2A	chr15:92936218-92938920	H1-neurons	neurons:	n/a	n/a
26	ZNF263	chr15:92936574-92937484	HEK293-T-REx	kidney:	n/a	chr15:92936977-92936986 chr15:92937235-92937256
27	CREB1	chr15:92936690-92937292	H1-hESC	embryonic stem cell:	n/a	n/a
28	MAX	chr15:92936496-92938099	H1-hESC	embryonic stem cell:	n/a	chr15:92937667-92937677 chr15:92936907-92936917 chr15:92938011-92938021 chr15:92937571-92937581
29	MYC	chr15:92936832-92937386	H1-hESC	embryonic stem cell:	n/a	chr15:92936907-92936917

Variant related genes	Relation type
ST8SIA2	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
5	esv3393959	chr15:92935948-92939196	Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92935400-92938400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
2	chr15:92935400-92938800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr15:92935800-92938800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr15:92936200-92938600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr15:92936200-92939400	Active TSS	HSMM	muscle
6	chr15:92936400-92937000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:92936400-92937000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:92936400-92937000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
9	chr15:92936400-92937000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
10	chr15:92936400-92937000	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
11	chr15:92936400-92937000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
12	chr15:92936400-92938200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr15:92936400-92938600	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr15:92936400-92938800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:92936400-92938800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:92936400-92939200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr15:92936600-92937000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:92936600-92937000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:92936600-92937000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:92936600-92937000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
21	chr15:92936600-92937000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:92936600-92937000	Bivalent Enhancer	Duodenum Mucosa	Duodenum
23	chr15:92936600-92937000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
24	chr15:92936600-92937000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
25	chr15:92936600-92937000	Bivalent Enhancer	Placenta	Placenta
26	chr15:92936600-92937000	Bivalent/Poised TSS	Psoas Muscle	Psoas
27	chr15:92936600-92937000	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
28	chr15:92936600-92937000	Flanking Bivalent TSS/Enh	Thymus	Thymus
29	chr15:92936600-92937000	Flanking Bivalent TSS/Enh	HMEC	breast
30	chr15:92936600-92937000	Flanking Bivalent TSS/Enh	NHEK	skin
31	chr15:92936600-92937200	Active TSS	Brain Germinal Matrix	brain
32	chr15:92936600-92937200	Bivalent Enhancer	Esophagus	oesophagus
33	chr15:92936600-92937600	Bivalent/Poised TSS	Brain Angular Gyrus	brain
34	chr15:92936600-92937600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
35	chr15:92936600-92937800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:92936600-92938000	Flanking Active TSS	Primary hematopoietic stem cells	blood
37	chr15:92936600-92938000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
38	chr15:92936600-92938200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
39	chr15:92936600-92938200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr15:92936600-92938400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
41	chr15:92936600-92938400	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
42	chr15:92936600-92938400	Enhancers	Pancreas	Pancrea
43	chr15:92936600-92938400	Active TSS	Right Atrium	heart
44	chr15:92936600-92938400	Bivalent/Poised TSS	Right Ventricle	heart
45	chr15:92936600-92938400	Active TSS	NHDF-Ad	bronchial
46	chr15:92936600-92938600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr15:92936600-92938600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
48	chr15:92936600-92938600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
49	chr15:92936600-92938600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:92936600-92938600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin

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