Variant report

Variant	rs576180915
Chromosome Location	chr2:153190894-153190895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYA	chr2:153190792-153190967	GM12878	blood:	n/a	n/a
2	NFYB	chr2:153190745-153190922	GM12878	blood:	n/a	n/a
3	MXI1	chr2:153190466-153194358	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:153181849..153185587-chr2:153188964..153191697,3	MCF-7	breast:

Variant related genes	Relation type
FMNL2	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693434	chr2:152998467-153208713	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3375546	chr2:153190731-153193579	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153187000-153191200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:153188800-153191200	Weak transcription	Right Atrium	heart
3	chr2:153190200-153191200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:153190600-153191200	Enhancers	Fetal Stomach	stomach
5	chr2:153190800-153191000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:153190800-153191000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:153190800-153191000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:153190800-153191000	Enhancers	Brain Angular Gyrus	brain
9	chr2:153190800-153191000	Enhancers	Brain Hippocampus Middle	brain
10	chr2:153190800-153191000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr2:153190800-153191000	Enhancers	Brain Substantia Nigra	brain
12	chr2:153190800-153191000	Enhancers	A549	lung
13	chr2:153190800-153191200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
14	chr2:153190800-153191200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:153190800-153191200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:153190800-153191200	Enhancers	Brain Anterior Caudate	brain
17	chr2:153190800-153191200	Enhancers	Brain Cingulate Gyrus	brain
18	chr2:153190800-153191200	Enhancers	Fetal Brain Male	brain
19	chr2:153190800-153191200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr2:153190800-153191200	Enhancers	Hela-S3	cervix
21	chr2:153190800-153191200	Enhancers	NHDF-Ad	bronchial
22	chr2:153190800-153191400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr2:153190800-153191400	Flanking Bivalent TSS/Enh	HepG2	liver
24	chr2:153190800-153191600	Flanking Active TSS	NHEK	skin
25	chr2:153190800-153192800	Active TSS	Skeletal Muscle Female	skeletal muscle

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