Variant report

Variant	rs5761896
Chromosome Location	chr22:21369681-21369682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr22:21368908-21370234	K562	blood:	n/a	n/a
2	POLR2A	chr22:21368088-21369948	U87	brain:	n/a	n/a
3	TRIM28	chr22:21368103-21369718	K562	blood:	n/a	n/a
4	CBX3	chr22:21367306-21370590	K562	blood:	n/a	n/a
5	USF1	chr22:21368978-21369734	K562	blood:	n/a	n/a
6	PML	chr22:21367717-21369768	K562	blood:	n/a	n/a
7	POLR2A	chr22:21368125-21370674	K562	blood:	n/a	n/a
8	TEAD4	chr22:21367339-21370635	K562	blood:	n/a	n/a
9	TAF1	chr22:21369017-21369771	K562	blood:	n/a	n/a
10	THAP1	chr22:21368054-21369774	K562	blood:	n/a	n/a
11	POLR2A	chr22:21368928-21370231	K562	blood:	n/a	n/a
12	ATF3	chr22:21368036-21369799	K562	blood:	n/a	n/a
13	PML	chr22:21367539-21369777	K562	blood:	n/a	n/a
14	NR2F2	chr22:21367463-21370352	K562	blood:	n/a	n/a
15	POLR2A	chr22:21368291-21369764	K562	blood:	n/a	n/a
16	YY1	chr22:21368044-21369688	K562	blood:	n/a	chr22:21368596-21368607
17	ETS1	chr22:21368021-21370313	K562	blood:	n/a	chr22:21368026-21368036 chr22:21368025-21368034 chr22:21369300-21369313 chr22:21368025-21368034 chr22:21368025-21368034 chr22:21368023-21368032 chr22:21368025-21368034 chr22:21368024-21368033 chr22:21368025-21368034 chr22:21368025-21368034 chr22:21368025-21368034 chr22:21368021-21368037
18	SIN3AK20	chr22:21367949-21370256	K562	blood:	n/a	n/a
19	ETS1	chr22:21368033-21370303	K562	blood:	n/a	chr22:21369300-21369313
20	HDAC2	chr22:21368159-21369685	K562	blood:	n/a	n/a
21	STAT5A	chr22:21368340-21369718	K562	blood:	n/a	n/a
22	HDAC2	chr22:21367430-21370669	K562	blood:	n/a	n/a
23	NR2F2	chr22:21367415-21370665	K562	blood:	n/a	n/a
24	STAT5A	chr22:21367787-21369697	K562	blood:	n/a	n/a
25	CTCF	chr22:21368218-21369761	K562	blood:	n/a	n/a
26	GATA1	chr22:21367060-21370343	K562	blood:	n/a	n/a
27	POLR2A	chr22:21368182-21370422	K562	blood:	n/a	n/a
28	POLR2A	chr22:21368882-21369747	U87	brain:	n/a	n/a
29	ZBTB7A	chr22:21367992-21370269	K562	blood:	n/a	n/a
30	TBL1XR1	chr22:21369669-21369693	K562	blood:	n/a	n/a
31	POLR2A	chr22:21368830-21369687	HepG2	liver:	n/a	n/a
32	GABPA	chr22:21368049-21370472	K562	blood:	n/a	n/a
33	HEY1	chr22:21368178-21370667	K562	blood:	n/a	chr22:21368668-21368683
34	POLR2A	chr22:21367945-21369956	U87	brain:	n/a	n/a
35	ELF1	chr22:21367421-21370257	K562	blood:	n/a	chr22:21368023-21368034 chr22:21368023-21368034 chr22:21368024-21368033
36	FOSL1	chr22:21368305-21369759	K562	blood:	n/a	n/a
37	MXI1	chr22:21366955-21370439	SK-N-SH	brain:	n/a	chr22:21368674-21368689 chr22:21368702-21368717
38	HEY1	chr22:21368987-21370426	K562	blood:	n/a	n/a
39	MXI1	chr22:21368079-21369739	IMR90	lung:	n/a	chr22:21368674-21368689 chr22:21368702-21368717
40	ZBTB7A	chr22:21368043-21370311	K562	blood:	n/a	n/a
41	POLR2A	chr22:21369090-21369709	Gliobla	brain:	n/a	n/a
42	MAX	chr22:21368008-21370661	K562	blood:	n/a	chr22:21369736-21369746 chr22:21368906-21368916

No.	Distal block	Cell Line	Cell type
1	chr22:21354919..21360607-chr22:21367214..21371527,6	MCF-7	breast:
2	chr22:21010487..21012848-chr22:21367490..21369998,2	K562	blood:
3	chr22:21368598..21370649-chr22:21982712..21985008,2	K562	blood:
4	chr22:21210943..21215199-chr22:21365730..21372829,9	K562	blood:
5	chr22:21355150..21357096-chr22:21369012..21370765,2	MCF-7	breast:
6	chr22:21270102..21273644-chr22:21366762..21370699,8	K562	blood:
7	chr22:21269758..21274224-chr22:21366755..21372844,9	K562	blood:
8	chr22:21211882..21214616-chr22:21367318..21370509,3	K562	blood:
9	chr22:21369351..21370097-chr22:21398719..21399612,2	MCF-7	breast:

Variant related genes	Relation type
TUBA3FP	TF binding region
ENSG00000161179	Chromatin interaction
ENSG00000099942	Chromatin interaction
ENSG00000223553	Chromatin interaction
ENSG00000241973	Chromatin interaction
ENSG00000230513	Chromatin interaction
ENSG00000206145	Chromatin interaction
ENSG00000099940	Chromatin interaction
ENSG00000264718	Chromatin interaction
ENSG00000184436	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12163067	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12170922	0.95[ASN][1000 genomes]
rs12628372	1.00[AFR][1000 genomes]
rs12628912	1.00[AFR][1000 genomes]
rs2073596	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2075280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2239960	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2329636	0.86[AMR][1000 genomes]
rs3893495	0.82[ASN][1000 genomes]
rs4141690	0.90[AMR][1000 genomes]
rs5752415	0.86[AMR][1000 genomes]
rs5752467	0.82[AMR][1000 genomes]
rs5761738	0.86[AMR][1000 genomes]
rs5761754	0.86[AMR][1000 genomes]
rs5761881	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs5761915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58324299	0.86[AMR][1000 genomes]
rs60503189	1.00[AFR][1000 genomes]
rs739521	0.86[AMR][1000 genomes]
rs739522	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:87 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056614	chr22:20470598-21462724	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv491637	chr22:20659547-21440514	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
3	nsv916634	chr22:20659547-21464119	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
4	nsv533942	chr22:20659547-21505417	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
5	nsv529472	chr22:20659547-21561514	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
6	nsv914390	chr22:20697466-21460008	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
7	nsv588291	chr22:20698139-21461274	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
8	nsv917647	chr22:20708889-21440515	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
9	nsv531742	chr22:20708890-21407690	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
10	nsv533852	chr22:20708890-21561514	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
11	nsv1061867	chr22:20716924-21462446	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
12	nsv1058870	chr22:20716924-21567219	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
13	nsv918225	chr22:20716924-21611338	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
14	nsv531744	chr22:20718170-21427936	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
15	nsv915954	chr22:20732437-21505417	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
16	nsv948669	chr22:20732809-21461607	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
17	nsv531746	chr22:20733427-21505417	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
18	nsv588295	chr22:20733495-21462353	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
19	nsv588296	chr22:20733495-21465780	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
20	nsv1056065	chr22:20734244-21460658	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
21	nsv544586	chr22:20734244-21460658	Strong transcription Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
22	nsv1067074	chr22:20739124-21440654	Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
23	nsv544587	chr22:20739124-21440654	Weak transcription Strong transcription Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
24	nsv1066482	chr22:20739125-21440655	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
25	nsv544588	chr22:20739125-21440655	Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
26	nsv1059978	chr22:20739324-21440515	Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
27	nsv544591	chr22:20739324-21440515	Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
28	nsv949306	chr22:20742450-21461607	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
29	nsv523162	chr22:20743536-21462353	Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
30	nsv1056565	chr22:20745762-21460658	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
31	nsv529335	chr22:20748976-21499971	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
32	nsv533337	chr22:20754407-21440515	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
33	nsv918090	chr22:20754421-21505417	Flanking Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
34	nsv491620	chr22:20754422-21440514	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
35	nsv1067639	chr22:20754422-21505417	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
36	nsv529720	chr22:20754422-21505417	Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
37	nsv995094	chr22:20895155-21374512	Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
38	nsv588297	chr22:20913757-21465780	Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
39	nsv917525	chr22:20918549-21440514	Enhancers Active TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
40	esv2763693	chr22:20935469-21465835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
41	nsv588299	chr22:20954760-21462353	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
42	nsv1064472	chr22:20958983-21440515	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
43	nsv544594	chr22:20958983-21440515	Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
44	nsv530673	chr22:20958984-21379958	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
45	nsv1056343	chr22:21007607-21460658	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
46	nsv530455	chr22:21025654-21505417	Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
47	nsv530675	chr22:21045038-21455556	Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
48	nsv1065617	chr22:21059671-21465835	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
49	nsv949029	chr22:21060359-21461607	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
50	nsv531749	chr22:21065882-21455556	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:21367600-21370400	Flanking Active TSS	K562	blood
2	chr22:21367800-21370400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
3	chr22:21368000-21369800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr22:21368000-21370000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr22:21368000-21370200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr22:21368000-21370200	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr22:21368000-21370400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
8	chr22:21368000-21370400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr22:21368000-21370400	Enhancers	Fetal Heart	heart
10	chr22:21368000-21370400	Flanking Active TSS	Fetal Muscle Trunk	muscle
11	chr22:21368000-21370400	Flanking Active TSS	Fetal Muscle Leg	muscle
12	chr22:21368000-21370400	Flanking Active TSS	Osteobl	bone
13	chr22:21368200-21369800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr22:21368200-21370000	Transcr. at gene 5' and 3'	Right Atrium	heart
15	chr22:21368200-21370400	Active TSS	Psoas Muscle	Psoas
16	chr22:21368200-21370600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr22:21368400-21370000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr22:21368600-21369800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr22:21368600-21369800	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr22:21368600-21369800	Flanking Active TSS	HepG2	liver
21	chr22:21368600-21371400	Enhancers	Spleen	Spleen
22	chr22:21368800-21369800	Flanking Active TSS	Brain Substantia Nigra	brain
23	chr22:21368800-21370000	Flanking Active TSS	NHDF-Ad	bronchial
24	chr22:21368800-21370200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr22:21368800-21370200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr22:21368800-21370200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr22:21368800-21370200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr22:21368800-21370200	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr22:21368800-21370200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
30	chr22:21368800-21370200	Flanking Active TSS	NHLF	lung
31	chr22:21368800-21370400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr22:21369000-21369800	Enhancers	H1 Cell Line	embryonic stem cell
33	chr22:21369000-21369800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr22:21369000-21369800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr22:21369000-21369800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr22:21369000-21369800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr22:21369000-21369800	Enhancers	Fetal Kidney	kidney
38	chr22:21369000-21369800	Enhancers	HUVEC	blood vessel
39	chr22:21369000-21370000	Enhancers	Primary hematopoietic stem cells	blood
40	chr22:21369000-21370000	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr22:21369000-21370200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr22:21369000-21370200	Enhancers	Left Ventricle	heart
43	chr22:21369000-21370200	Enhancers	Lung	lung
44	chr22:21369000-21370200	Enhancers	NH-A	brain
45	chr22:21369000-21370400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr22:21369000-21370400	Enhancers	Fetal Intestine Large	intestine
47	chr22:21369000-21370400	Enhancers	Right Ventricle	heart
48	chr22:21369000-21371600	Enhancers	Placenta	Placenta
49	chr22:21369200-21370000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr22:21369200-21370000	Enhancers	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links