Variant report

Variant	rs57620007
Chromosome Location	chrX:55476740-55476741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chrX:55476740-55476890	WERI-Rb-1	eye:	n/a	chrX:55476869-55476887
2	RAD21	chrX:55476715-55477124	SK-N-SH	brain:	n/a	chrX:55476870-55476889
3	CTCF	chrX:55476702-55477039	IMR90	lung:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
4	CTCF	chrX:55476740-55476890	HAc	cerebellar:	n/a	chrX:55476869-55476887
5	RAD21	chrX:55476678-55477068	H1-hESC	embryonic stem cell:	n/a	chrX:55476870-55476889
6	RAD21	chrX:55476664-55477150	MCF-7	breast:	n/a	chrX:55476870-55476889
7	RAD21	chrX:55476716-55477042	A549	lung:	n/a	chrX:55476870-55476889
8	RAD21	chrX:55476677-55477071	A549	lung:	n/a	chrX:55476870-55476889
9	CTCF	chrX:55476740-55476890	HA-sp	spinal cord:	n/a	chrX:55476869-55476887
10	RAD21	chrX:55476709-55477088	Hela-S3	cervix:	n/a	chrX:55476870-55476889
11	RAD21	chrX:55476697-55476998	HCT-116	colon:	n/a	chrX:55476870-55476889
12	RAD21	chrX:55476686-55477052	HCT-116	colon:	n/a	chrX:55476870-55476889
13	RAD21	chrX:55476708-55477039	H1-hESC	embryonic stem cell:	n/a	chrX:55476870-55476889
14	CTCF	chrX:55476692-55476984	K562	blood:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
15	CTCF	chrX:55476720-55476870	HEEpiC	esophagus:	n/a	n/a
16	RAD21	chrX:55476721-55477120	MCF-7	breast:	n/a	chrX:55476870-55476889
17	CTCF	chrX:55476718-55476966	HepG2	liver:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
18	RAD21	chrX:55476724-55477051	IMR90	lung:	n/a	chrX:55476870-55476889
19	SMC3	chrX:55476709-55477074	Hela-S3	cervix:	n/a	chrX:55476871-55476885
20	CTCF	chrX:55476740-55476890	MCF-7	breast:	n/a	chrX:55476869-55476887
21	CTCF	chrX:55476706-55477053	K562	blood:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
22	CTCF	chrX:55476740-55476890	HRE	kidney:	n/a	chrX:55476869-55476887
23	CTCF	chrX:55476700-55476850	BE2_C	brain:	n/a	n/a
24	CTCF	chrX:55476692-55477088	MCF-7	breast:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
25	CTCF	chrX:55476740-55476890	HRPEpiC	eye:	n/a	chrX:55476869-55476887
26	CTCF	chrX:55476727-55477040	GM12878	blood:	n/a	chrX:55476869-55476887 chrX:55476871-55476892

Variant related genes	Relation type
ENSG00000266328	TF binding region
MAGEH1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410436	chrX:55229677-55671986	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv3494957	chrX:55328700-55585199	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3494958	chrX:55328757-55585154	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv469510	chrX:55463837-55570914	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv482619	chrX:55463837-55570914	Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links