Variant report

Variant	rs576216812
Chromosome Location	chr8:125902462-125902463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125900915..125903416-chr8:125906634..125910674,4	K562	blood:
2	chr8:125900299..125904105-chr8:125905303..125908707,4	MCF-7	breast:
3	chr8:125826377..125828891-chr8:125902425..125904376,2	K562	blood:
4	chr8:125901791..125903358-chr8:125908573..125910554,2	K562	blood:
5	chr8:125550619..125552268-chr8:125900750..125903343,2	MCF-7	breast:
6	chr8:125893623..125896589-chr8:125899803..125902568,2	MCF-7	breast:
7	chr8:125545642..125547249-chr8:125900302..125903286,2	MCF-7	breast:
8	chr8:125863185..125866167-chr8:125900364..125902687,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv527372	chr8:125902415-125905658	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125900000-125903200	Enhancers	HMEC	breast
2	chr8:125900200-125902600	Enhancers	Esophagus	oesophagus
3	chr8:125900200-125903000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:125900200-125903200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:125900600-125903200	Weak transcription	Right Atrium	heart
6	chr8:125901600-125906000	Weak transcription	K562	blood
7	chr8:125901800-125902800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:125902200-125903000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:125902400-125902600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:125902400-125902800	Enhancers	Left Ventricle	heart
11	chr8:125902400-125903000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:125902400-125903000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr8:125902400-125903000	Flanking Active TSS	NHEK	skin
14	chr8:125902400-125903000	Enhancers	Osteobl	bone
15	chr8:125902400-125903200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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