Variant report

Variant	rs576229595
Chromosome Location	chr2:30866373-30866374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:30864804..30866571-chr2:30870628..30873251,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv581266	chr2:30864789-30874229	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv215004	chr2:30865289-30869535	Weak transcription Enhancers Strong transcription	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30835800-30871200	Weak transcription	Small Intestine	intestine
2	chr2:30841800-30872200	Weak transcription	Spleen	Spleen
3	chr2:30845600-30877800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:30845800-30877800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:30850200-30874600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:30850400-30869200	Weak transcription	Gastric	stomach
7	chr2:30850400-30874600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:30853200-30867200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:30853200-30872000	Weak transcription	NHDF-Ad	bronchial
10	chr2:30854000-30867000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr2:30854200-30867600	Weak transcription	Psoas Muscle	Psoas
12	chr2:30854400-30866600	Weak transcription	GM12878-XiMat	blood
13	chr2:30855600-30867200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:30856400-30866600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr2:30857000-30869000	Weak transcription	Hela-S3	cervix
16	chr2:30859600-30872000	Weak transcription	Fetal Stomach	stomach
17	chr2:30860400-30878200	Weak transcription	NHLF	lung
18	chr2:30861400-30876800	Weak transcription	Fetal Heart	heart
19	chr2:30861600-30872200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr2:30862000-30868600	Weak transcription	Brain Substantia Nigra	brain
21	chr2:30862400-30866800	Weak transcription	HMEC	breast
22	chr2:30862400-30868400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr2:30863200-30871800	Weak transcription	Colon Smooth Muscle	Colon
24	chr2:30863400-30866800	Weak transcription	Pancreas	Pancrea
25	chr2:30863600-30866600	Weak transcription	Fetal Intestine Large	intestine
26	chr2:30863600-30882200	Weak transcription	Ovary	ovary
27	chr2:30863800-30871800	Weak transcription	HSMMtube	muscle
28	chr2:30864000-30866400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr2:30864000-30866600	Weak transcription	Thymus	Thymus
30	chr2:30864000-30868600	Weak transcription	Lung	lung
31	chr2:30864000-30870800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr2:30864000-30872000	Weak transcription	Right Ventricle	heart
33	chr2:30864000-30874800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr2:30864200-30866600	Weak transcription	Liver	Liver
35	chr2:30864200-30866600	Weak transcription	Fetal Thymus	thymus
36	chr2:30864200-30868000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr2:30864200-30868200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr2:30864200-30868800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr2:30864200-30869400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr2:30864200-30871000	Weak transcription	Fetal Muscle Leg	muscle
41	chr2:30864200-30871800	Weak transcription	Left Ventricle	heart
42	chr2:30864200-30872200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr2:30864400-30869400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr2:30864600-30866600	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr2:30864600-30866800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr2:30864600-30869200	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr2:30864800-30866600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr2:30864800-30875200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr2:30864800-30876600	Weak transcription	Osteobl	bone
50	chr2:30865000-30871800	Weak transcription	Stomach Smooth Muscle	stomach

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