The 2.0 version of rSNPBase

Variant report

Variant rs5762404
Chromosome Location chr22:28314330-28314331
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:28306400-28314400 Weak transcription Esophagus oesophagus
2 chr22:28311200-28316200 Active TSS GM12878-XiMat blood
3 chr22:28311400-28314400 Enhancers Small Intestine intestine
4 chr22:28312600-28314400 Enhancers Sigmoid Colon Sigmoid Colon
5 chr22:28313000-28317200 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr22:28313200-28314400 Flanking Active TSS Muscle Satellite Cultured Cells --
7 chr22:28313200-28314400 Enhancers Stomach Mucosa stomach
8 chr22:28313200-28314400 Flanking Active TSS HUVEC blood vessel
9 chr22:28313200-28314400 Flanking Active TSS Osteobl bone
10 chr22:28313200-28314600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr22:28313200-28314800 Flanking Active TSS Primary T helper cells PMA-I stimulated --
12 chr22:28313200-28316200 Active TSS Aorta Aorta
13 chr22:28313400-28314400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr22:28313400-28314400 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr22:28313600-28314400 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
16 chr22:28313600-28314400 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
17 chr22:28313600-28314400 Flanking Active TSS Stomach Smooth Muscle stomach
18 chr22:28313600-28314600 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr22:28313600-28314600 Transcr. at gene 5' and 3' Dnd41 blood
20 chr22:28313600-28314800 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
21 chr22:28313600-28314800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr22:28313600-28315400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
23 chr22:28313600-28316200 Active TSS Ovary ovary
24 chr22:28313800-28314400 Flanking Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr22:28313800-28314400 Flanking Active TSS HUES64 Cell Line embryonic stem cell
26 chr22:28313800-28314400 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
27 chr22:28313800-28314400 Flanking Active TSS iPS-18 Cell Line embryonic stem cell
28 chr22:28313800-28314400 Flanking Active TSS Cortex derived primary cultured neurospheres brain
29 chr22:28313800-28314400 Flanking Active TSS Brain Angular Gyrus brain
30 chr22:28313800-28314400 Flanking Active TSS Colon Smooth Muscle Colon
31 chr22:28313800-28314400 Flanking Active TSS Duodenum Mucosa Duodenum
32 chr22:28313800-28314400 Flanking Active TSS Fetal Intestine Large intestine
33 chr22:28313800-28314400 Flanking Active TSS Fetal Stomach stomach
34 chr22:28313800-28314400 Enhancers Gastric stomach
35 chr22:28313800-28314400 Flanking Active TSS Rectal Mucosa Donor 29 rectum
36 chr22:28313800-28314600 Flanking Active TSS Primary B cells from cord blood blood
37 chr22:28313800-28314600 Flanking Active TSS Primary T cells from cord blood blood
38 chr22:28313800-28314600 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
39 chr22:28313800-28314600 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
40 chr22:28313800-28314600 Flanking Active TSS Liver Liver
41 chr22:28313800-28314600 Flanking Active TSS Brain Cingulate Gyrus brain
42 chr22:28313800-28314600 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
43 chr22:28313800-28314600 Flanking Active TSS Fetal Brain Female brain
44 chr22:28313800-28314600 Flanking Active TSS Fetal Lung lung
45 chr22:28313800-28314600 Flanking Active TSS Skeletal Muscle Male skeletal muscle
46 chr22:28313800-28314600 Flanking Active TSS Thymus Thymus
47 chr22:28313800-28314800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr22:28313800-28314800 Flanking Active TSS Adipose Nuclei Adipose
49 chr22:28313800-28314800 Flanking Active TSS Skeletal Muscle Female skeletal muscle
50 chr22:28313800-28315200 Flanking Active TSS Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015