Variant report

Variant	rs5762424
Chromosome Location	chr22:28360869-28360870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28358748..28362287-chr22:28366075..28369261,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11912165	1.00[JPT][hapmap]
rs12053760	0.95[EUR][1000 genomes]
rs16986969	1.00[EUR][1000 genomes]
rs2142561	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2294820	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2294969	1.00[JPT][hapmap]
rs5752658	0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5752663	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5752671	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5752672	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5752687	1.00[JPT][hapmap]
rs5762408	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs5762419	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5762422	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5762449	1.00[JPT][hapmap]
rs5762474	1.00[JPT][hapmap]
rs5762492	1.00[JPT][hapmap]
rs5762498	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28316400-28370200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr22:28316400-28376800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr22:28316400-28378000	Weak transcription	Esophagus	oesophagus
4	chr22:28318800-28382000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr22:28319600-28383000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr22:28321400-28379000	Weak transcription	Primary B cells from cord blood	blood
7	chr22:28322000-28365200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr22:28322000-28366200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr22:28326800-28368600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr22:28329400-28377800	Weak transcription	Primary T cells from cord blood	blood
11	chr22:28339400-28367800	Weak transcription	Fetal Intestine Small	intestine
12	chr22:28351000-28362200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr22:28353400-28369200	Weak transcription	Fetal Stomach	stomach
14	chr22:28355400-28387800	Weak transcription	Fetal Brain Male	brain
15	chr22:28355600-28366800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr22:28355600-28378000	Weak transcription	Gastric	stomach
17	chr22:28355800-28363600	Weak transcription	Lung	lung
18	chr22:28355800-28368600	Weak transcription	Pancreas	Pancrea
19	chr22:28355800-28371800	Weak transcription	Right Ventricle	heart
20	chr22:28355800-28378000	Weak transcription	Aorta	Aorta
21	chr22:28355800-28378000	Weak transcription	Left Ventricle	heart
22	chr22:28356400-28361800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr22:28356600-28361600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr22:28356600-28361800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr22:28356600-28365600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr22:28356600-28378000	Weak transcription	Psoas Muscle	Psoas
27	chr22:28356800-28361600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr22:28357000-28361400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr22:28357000-28362200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr22:28357600-28361400	Weak transcription	HepG2	liver
31	chr22:28358600-28365600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr22:28358600-28379400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr22:28359000-28364000	Weak transcription	Brain Angular Gyrus	brain
34	chr22:28359000-28365800	Weak transcription	Fetal Heart	heart
35	chr22:28359000-28367800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr22:28359000-28368600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr22:28359000-28377800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr22:28359200-28364200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr22:28359200-28377800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr22:28359600-28362200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr22:28360000-28362200	Weak transcription	Fetal Muscle Leg	muscle
42	chr22:28360000-28368800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr22:28360000-28371600	Weak transcription	Ovary	ovary
44	chr22:28360000-28379400	Weak transcription	Colonic Mucosa	Colon
45	chr22:28360200-28382800	Weak transcription	HSMM	muscle
46	chr22:28360600-28369000	Weak transcription	Liver	Liver
47	chr22:28360800-28392400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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