Variant report

Variant	rs5762446
Chromosome Location	chr22:28401427-28401428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:28401393..28403661-chr22:28406646..28408733,2	MCF-7	breast:
2	chr22:28401032..28403259-chr22:28403789..28405576,2	K562	blood:
3	chr22:28400747..28403073-chr22:28409689..28411221,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11912165	1.00[CHB][hapmap]
rs2064360	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap]
rs2294820	0.81[AFR][1000 genomes]
rs2294969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs56695231	0.90[ASN][1000 genomes]
rs5752658	1.00[CEU][hapmap]
rs5752679	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5752687	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5752690	0.90[ASN][1000 genomes]
rs5752693	0.98[AFR][1000 genomes]
rs5762408	1.00[CEU][hapmap]
rs5762449	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5762474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs5762478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs5762492	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5762498	1.00[CHB][hapmap]
rs5762508	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs59105820	0.86[AFR][1000 genomes]
rs9608667	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv522306	chr22:28378472-28402624	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28373600-28404000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:28373800-28404200	Strong transcription	Fetal Stomach	stomach
3	chr22:28373800-28405200	Strong transcription	Fetal Intestine Small	intestine
4	chr22:28381800-28412400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr22:28384000-28405000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr22:28384800-28401600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr22:28386200-28405800	Strong transcription	Dnd41	blood
8	chr22:28386200-28416000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr22:28387400-28405200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr22:28387600-28405000	Weak transcription	Fetal Kidney	kidney
11	chr22:28389200-28410000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr22:28389200-28413000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr22:28390000-28414600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr22:28390400-28416200	Weak transcription	Colonic Mucosa	Colon
15	chr22:28391200-28402400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr22:28392200-28405200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr22:28393400-28408800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr22:28394200-28405000	Weak transcription	Fetal Brain Male	brain
19	chr22:28394200-28405000	Weak transcription	NHDF-Ad	bronchial
20	chr22:28394600-28402600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr22:28394800-28414000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr22:28395000-28416400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr22:28395200-28405000	Weak transcription	Brain Substantia Nigra	brain
24	chr22:28395200-28405200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr22:28395200-28409200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr22:28395400-28403400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr22:28395400-28404600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr22:28395400-28406400	Weak transcription	Aorta	Aorta
29	chr22:28395400-28409200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr22:28395600-28408200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr22:28395600-28413000	Weak transcription	Pancreas	Pancrea
32	chr22:28396000-28422400	Weak transcription	Primary T cells from cord blood	blood
33	chr22:28396800-28407600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr22:28397200-28404000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr22:28397200-28404200	Weak transcription	Colon Smooth Muscle	Colon
36	chr22:28397200-28405000	Weak transcription	Brain Hippocampus Middle	brain
37	chr22:28397200-28409400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr22:28397200-28423000	Weak transcription	HepG2	liver
39	chr22:28397400-28405000	Weak transcription	Brain Anterior Caudate	brain
40	chr22:28397400-28408800	Weak transcription	Brain Angular Gyrus	brain
41	chr22:28397400-28412000	Weak transcription	Placenta	Placenta
42	chr22:28397600-28404600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr22:28397600-28405000	Weak transcription	Gastric	stomach
44	chr22:28398000-28405200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr22:28398400-28405600	Weak transcription	Esophagus	oesophagus
46	chr22:28399200-28401600	Genic enhancers	Fetal Muscle Leg	muscle
47	chr22:28399200-28402400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr22:28399400-28402000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr22:28399400-28402200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr22:28399400-28404000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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