Variant report

Variant	rs57625144
Chromosome Location	chr6:30417827-30417828
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30415302..30418095-chr6:30418692..30421060,4	K562	blood:
2	chr6:30320856..30322716-chr6:30417806..30419569,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4947284	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4959049	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4959051	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57548202	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58101292	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58314420	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58504477	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60118758	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60162146	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60937545	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61152365	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72502523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72502524	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72502525	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427041	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
4	nsv601478	chr6:30383768-30438226	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30416800-30418000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:30416800-30418200	Bivalent Enhancer	Primary T cells from cord blood	blood
3	chr6:30417000-30418400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:30417000-30418400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr6:30417200-30418000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:30417200-30418400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr6:30417200-30418400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr6:30417200-30418600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr6:30417200-30421600	Bivalent Enhancer	Fetal Thymus	thymus
10	chr6:30417400-30418200	Bivalent Enhancer	Dnd41	blood
11	chr6:30417400-30418400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:30417600-30418400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr6:30417600-30418600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:30417600-30419600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:30417600-30419800	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:30417800-30418000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:30417800-30418400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr6:30417800-30418400	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
19	chr6:30417800-30418400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:30417800-30418800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
21	chr6:30417800-30418800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:30417800-30418800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood

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