Variant report

Variant	rs5762543
Chromosome Location	chr22:28668803-28668804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12484116	1.00[AFR][1000 genomes]
rs12484855	1.00[AFR][1000 genomes]
rs134195	1.00[AFR][1000 genomes]
rs16986280	1.00[AFR][1000 genomes]
rs5752698	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs5762533	1.00[ASN][1000 genomes]
rs5762537	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs5762546	1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28651800-28690600	Weak transcription	Dnd41	blood
2	chr22:28653000-28671600	Weak transcription	Fetal Stomach	stomach
3	chr22:28657000-28691600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr22:28659400-28671200	Weak transcription	Fetal Lung	lung
5	chr22:28662800-28671200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr22:28662800-28671200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr22:28663000-28671000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr22:28664400-28671800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr22:28664400-28674800	Weak transcription	NHDF-Ad	bronchial
10	chr22:28665200-28671000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr22:28665600-28677600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr22:28666200-28691000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr22:28668800-28669000	Enhancers	Fetal Intestine Large	intestine
14	chr22:28668800-28669200	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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