Variant report

Variant	rs5762564
Chromosome Location	chr22:28736985-28736986
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs5762664	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28726200-28737400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr22:28735000-28740600	Weak transcription	Fetal Stomach	stomach
3	chr22:28736000-28737000	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr22:28736000-28737200	ZNF genes & repeats	Dnd41	blood
5	chr22:28736000-28744200	Weak transcription	Lung	lung
6	chr22:28736200-28740800	Weak transcription	Fetal Kidney	kidney
7	chr22:28736400-28737400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr22:28736400-28746600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr22:28736600-28737200	Enhancers	Fetal Brain Female	brain
10	chr22:28736600-28737400	Enhancers	Brain Angular Gyrus	brain
11	chr22:28736600-28737600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr22:28736600-28737600	Enhancers	Brain Substantia Nigra	brain
13	chr22:28736600-28737800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr22:28736600-28737800	Enhancers	HUVEC	blood vessel
15	chr22:28736800-28737400	Enhancers	HMEC	breast
16	chr22:28736800-28737600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr22:28736800-28738000	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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