Variant report

Variant	rs576279615
Chromosome Location	chr6:24879901-24879902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:24879584-24880046	Hela-S3	cervix:	n/a	n/a
2	EP300	chr6:24879551-24879983	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr6:24879382-24880400	Hela-S3	cervix:	n/a	n/a
4	TFAP2A	chr6:24879592-24879958	Hela-S3	cervix:	n/a	n/a
5	GATA3	chr6:24879391-24880056	MCF-7	breast:	n/a	n/a
6	MAX	chr6:24879490-24880010	Hela-S3	cervix:	n/a	n/a
7	RCOR1	chr6:24879604-24879990	Hela-S3	cervix:	n/a	n/a
8	EP300	chr6:24879617-24879949	T-47D	breast:	n/a	n/a
9	POLR2A	chr6:24879694-24880142	Hela-S3	cervix:	n/a	n/a
10	GATA3	chr6:24879507-24880101	SK-N-SH	brain:	n/a	n/a
11	FOS	chr6:24879579-24880058	Hela-S3	cervix:	n/a	n/a
12	CHD2	chr6:24879509-24880059	Hela-S3	cervix:	n/a	n/a
13	GATA3	chr6:24879384-24880075	SK-N-SH	brain:	n/a	n/a
14	USF2	chr6:24879624-24880062	Hela-S3	cervix:	n/a	n/a
15	GATA3	chr6:24879537-24879984	T-47D	breast:	n/a	n/a
16	STAT1	chr6:24879456-24880165	Hela-S3	cervix:	n/a	chr6:24879895-24879907 chr6:24880076-24880090
17	RFX5	chr6:24879539-24880077	Hela-S3	cervix:	n/a	n/a
18	TFAP2C	chr6:24879570-24880011	Hela-S3	cervix:	n/a	n/a
19	JUND	chr6:24879460-24879971	SK-N-SH	brain:	n/a	n/a
20	CEBPB	chr6:24879529-24879964	Hela-S3	cervix:	n/a	n/a
21	TCF7L2	chr6:24879449-24879931	Hela-S3	cervix:	n/a	n/a
22	RAD21	chr6:24879606-24880029	Hela-S3	cervix:	n/a	n/a
23	MAX	chr6:24879558-24879952	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr6:24879435-24880133	Hela-S3	cervix:	n/a	n/a
25	GATA3	chr6:24879613-24879928	T-47D	breast:	n/a	n/a
26	STAT3	chr6:24879539-24880072	Hela-S3	cervix:	n/a	chr6:24879895-24879907
27	GATA3	chr6:24879596-24879984	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
FAM65B	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3507963	chr6:24878423-24880421	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	esv2556930	chr6:24878483-24879928	Enhancers Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24855200-24895000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
2	chr6:24856200-24882400	Weak transcription	NHLF	lung
3	chr6:24859400-24886800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:24862800-24885600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr6:24862800-24887400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:24870400-24883800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr6:24871800-24886800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:24874800-24883200	Weak transcription	Brain Anterior Caudate	brain
9	chr6:24874800-24883600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:24875400-24882000	Weak transcription	NHDF-Ad	bronchial
11	chr6:24875600-24886800	Weak transcription	Fetal Heart	heart
12	chr6:24875800-24887800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:24876000-24901800	Weak transcription	Spleen	Spleen
14	chr6:24876200-24882600	Weak transcription	HSMMtube	muscle
15	chr6:24876600-24880800	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:24876800-24880600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr6:24877000-24883000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:24877000-24888000	Genic enhancers	Primary T cells from cord blood	blood
19	chr6:24877200-24880400	Genic enhancers	Primary B cells from peripheral blood	blood
20	chr6:24877400-24883400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr6:24877400-24888000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:24877600-24880000	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:24877600-24880200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:24877600-24881400	Weak transcription	Psoas Muscle	Psoas
25	chr6:24877800-24882000	Strong transcription	Primary B cells from cord blood	blood
26	chr6:24878000-24880200	Enhancers	Placenta	Placenta
27	chr6:24878200-24880200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:24878400-24881200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:24878400-24881800	Weak transcription	Fetal Thymus	thymus
30	chr6:24878400-24884000	Weak transcription	Esophagus	oesophagus
31	chr6:24878400-24887800	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr6:24878400-24899800	Weak transcription	Thymus	Thymus
33	chr6:24878600-24882200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:24878800-24885400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr6:24879000-24880800	Enhancers	H1 Cell Line	embryonic stem cell
36	chr6:24879000-24881000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr6:24879200-24880000	Genic enhancers	Primary T cells fromperipheralblood	blood
38	chr6:24879200-24880600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:24879200-24888200	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr6:24879400-24880000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:24879400-24880000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
42	chr6:24879400-24880000	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:24879400-24880200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:24879400-24880200	Flanking Active TSS	Hela-S3	cervix
45	chr6:24879400-24880600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:24879400-24882800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:24879400-24883200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:24879600-24880000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
49	chr6:24879600-24880000	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr6:24879600-24880200	Enhancers	Osteobl	bone

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