Variant report

Variant	rs5762858
Chromosome Location	chr22:29249002-29249003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10427628	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12170231	0.83[EUR][1000 genomes]
rs5752808	0.83[EUR][1000 genomes]
rs5752810	0.83[EUR][1000 genomes]
rs5752814	0.83[EUR][1000 genomes]
rs5752815	0.81[EUR][1000 genomes]
rs5762826	0.83[EUR][1000 genomes]
rs5762829	0.83[EUR][1000 genomes]
rs5762835	0.81[EUR][1000 genomes]
rs5762838	0.83[EUR][1000 genomes]
rs5762839	0.83[EUR][1000 genomes]
rs5762848	0.83[EUR][1000 genomes]
rs5762852	0.86[EUR][1000 genomes]
rs5762855	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5997409	0.83[EUR][1000 genomes]
rs6005917	0.83[EUR][1000 genomes]
rs9625591	0.83[EUR][1000 genomes]
rs9625595	0.83[EUR][1000 genomes]
rs9625600	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs5762858	XBP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29234000-29251600	Weak transcription	Fetal Lung	lung
2	chr22:29243200-29249800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr22:29244800-29251400	Weak transcription	Fetal Intestine Small	intestine
4	chr22:29244800-29251800	Weak transcription	Fetal Stomach	stomach
5	chr22:29246000-29252000	Weak transcription	Ovary	ovary
6	chr22:29246200-29251600	Weak transcription	Liver	Liver
7	chr22:29246400-29251800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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