Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29248944..29251170-chr22:29435947..29438791,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12628211	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35259224	0.82[ASN][1000 genomes]
rs5752807	0.82[ASN][1000 genomes]
rs5752809	0.82[ASN][1000 genomes]
rs5752812	0.82[ASN][1000 genomes]
rs5762815	0.80[ASN][1000 genomes]
rs5762824	0.82[ASN][1000 genomes]
rs5762825	0.82[ASN][1000 genomes]
rs5762853	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5762854	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs5762863	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5762864	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5762867	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs5997408	0.80[ASN][1000 genomes]
rs6005916	0.82[ASN][1000 genomes]
rs6005927	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6005929	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6005930	0.84[AFR][1000 genomes]
rs7287124	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7287806	0.80[ASN][1000 genomes]
rs763073	0.80[ASN][1000 genomes]
rs8137969	0.82[ASN][1000 genomes]
rs9625588	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs5762859	XBP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29234000-29251600	Weak transcription	Fetal Lung	lung
2	chr22:29243200-29249800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr22:29244800-29251400	Weak transcription	Fetal Intestine Small	intestine
4	chr22:29244800-29251800	Weak transcription	Fetal Stomach	stomach
5	chr22:29246000-29252000	Weak transcription	Ovary	ovary
6	chr22:29246200-29251600	Weak transcription	Liver	Liver
7	chr22:29246400-29251800	Weak transcription	Pancreas	Pancrea

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