Variant report

Variant	rs5762861
Chromosome Location	chr22:29250505-29250506
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10222249	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5752797	0.84[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs5762799	0.84[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs5762813	0.81[EUR][1000 genomes]
rs5762853	0.80[EUR][1000 genomes]
rs5762862	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5762863	0.81[EUR][1000 genomes]
rs5762864	0.81[EUR][1000 genomes]
rs6005922	0.95[AFR][1000 genomes]
rs6005929	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29234000-29251600	Weak transcription	Fetal Lung	lung
2	chr22:29244800-29251400	Weak transcription	Fetal Intestine Small	intestine
3	chr22:29244800-29251800	Weak transcription	Fetal Stomach	stomach
4	chr22:29246000-29252000	Weak transcription	Ovary	ovary
5	chr22:29246200-29251600	Weak transcription	Liver	Liver
6	chr22:29246400-29251800	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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