Variant report

Variant	rs5762941
Chromosome Location	chr22:29384503-29384504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr22:29384460-29384700	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29380991..29382745-chr22:29384341..29385877,2	K562	blood:
2	chr22:29381053..29382745-chr22:29384377..29385897,2	K562	blood:

Variant related genes	Relation type
ZNRF3-IT1	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv16903	chr22:29383848-29386970	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29365800-29394800	Weak transcription	Pancreas	Pancrea
2	chr22:29373400-29390800	Weak transcription	Hela-S3	cervix
3	chr22:29373600-29400200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr22:29374400-29395200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr22:29374600-29385000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr22:29374600-29395600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr22:29374600-29400000	Weak transcription	Right Ventricle	heart
8	chr22:29374600-29401200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr22:29375200-29385200	Weak transcription	Brain Substantia Nigra	brain
10	chr22:29375600-29390800	Weak transcription	NHDF-Ad	bronchial
11	chr22:29375800-29395400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr22:29378000-29385400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr22:29379600-29388400	Weak transcription	Psoas Muscle	Psoas
14	chr22:29379600-29400800	Weak transcription	Fetal Brain Female	brain
15	chr22:29380000-29388400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr22:29380400-29384800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr22:29380800-29400800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr22:29381000-29385200	Genic enhancers	HepG2	liver
19	chr22:29381000-29386600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr22:29381000-29388400	Weak transcription	Fetal Heart	heart
21	chr22:29381000-29393000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr22:29381000-29395600	Weak transcription	Esophagus	oesophagus
23	chr22:29381200-29384800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr22:29381200-29385000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr22:29381200-29400400	Weak transcription	Lung	lung
26	chr22:29381400-29389400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr22:29381600-29386000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr22:29381600-29389000	Weak transcription	Dnd41	blood
29	chr22:29381600-29395400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr22:29381800-29388400	Weak transcription	Placenta	Placenta
31	chr22:29381800-29388400	Weak transcription	HSMMtube	muscle
32	chr22:29381800-29390600	Weak transcription	Colonic Mucosa	Colon
33	chr22:29382000-29384600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr22:29382000-29387400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr22:29382000-29400200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr22:29382200-29385400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr22:29382400-29393200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr22:29382800-29384600	Genic enhancers	HUES6 Cell Line	embryonic stem cell
39	chr22:29382800-29384800	Genic enhancers	HUES64 Cell Line	embryonic stem cell
40	chr22:29383000-29384600	Genic enhancers	H1 Cell Line	embryonic stem cell
41	chr22:29383000-29385800	Strong transcription	Liver	Liver
42	chr22:29383000-29390000	Strong transcription	Fetal Intestine Small	intestine
43	chr22:29383200-29384600	Strong transcription	Brain Anterior Caudate	brain
44	chr22:29383200-29384600	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr22:29383200-29384800	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr22:29383200-29384800	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr22:29383200-29385000	Weak transcription	Brain Angular Gyrus	brain
48	chr22:29383200-29385600	Genic enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr22:29383200-29386200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr22:29383200-29386200	Strong transcription	Fetal Intestine Large	intestine

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