Variant report

Variant	rs576295689
Chromosome Location	chr9:116101583-116101584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116100085..116103833-chr9:116137751..116140667,4	MCF-7	breast:
2	chr9:116065580..116067565-chr9:116101050..116102835,2	MCF-7	breast:
3	chr9:116099899..116105558-chr9:116170913..116174361,7	MCF-7	breast:
4	chr9:116101037..116103011-chr9:116343010..116344663,2	MCF-7	breast:
5	chr9:116101294..116104058-chr9:116110419..116112658,2	K562	blood:
6	chr9:116036149..116038435-chr9:116101107..116104521,3	K562	blood:
7	chr9:116035986..116039204-chr9:116098421..116104240,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157653	Chromatin interaction
ENSG00000138835	Chromatin interaction
ENSG00000165188	Chromatin interaction
ENSG00000176386	Chromatin interaction
ENSG00000148229	Chromatin interaction
ENSG00000119431	Chromatin interaction
ENSG00000136875	Chromatin interaction
ENSG00000119411	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv521449	chr9:116101391-116102463	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116073800-116101600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:116077400-116101600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:116080800-116101600	Weak transcription	Fetal Brain Male	brain
4	chr9:116081000-116101600	Weak transcription	Pancreas	Pancrea
5	chr9:116082200-116101600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:116082800-116101600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:116082800-116101600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:116082800-116101600	Weak transcription	Brain Substantia Nigra	brain
9	chr9:116082800-116101600	Weak transcription	Fetal Kidney	kidney
10	chr9:116082800-116101600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr9:116082800-116102000	Weak transcription	Aorta	Aorta
12	chr9:116083800-116101600	Weak transcription	Right Ventricle	heart
13	chr9:116084200-116101600	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:116085400-116101600	Weak transcription	Brain Angular Gyrus	brain
15	chr9:116093000-116101800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:116094400-116101600	Weak transcription	Ovary	ovary
17	chr9:116095000-116101600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr9:116101200-116101600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:116101200-116101600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:116101200-116101600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:116101200-116101600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:116101200-116101600	Enhancers	K562	blood
23	chr9:116101200-116101800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr9:116101200-116101800	Enhancers	Left Ventricle	heart
25	chr9:116101200-116101800	Flanking Active TSS	HepG2	liver
26	chr9:116101200-116102000	Flanking Active TSS	Colon Smooth Muscle	Colon
27	chr9:116101400-116101600	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr9:116101400-116101600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:116101400-116101600	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr9:116101400-116101600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr9:116101400-116101600	Enhancers	Muscle Satellite Cultured Cells	--
32	chr9:116101400-116101600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:116101400-116101600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:116101400-116101600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:116101400-116101600	Enhancers	Adipose Nuclei	Adipose
36	chr9:116101400-116101600	Enhancers	Brain Anterior Caudate	brain
37	chr9:116101400-116101600	Enhancers	Brain Cingulate Gyrus	brain
38	chr9:116101400-116101600	Enhancers	Brain Germinal Matrix	brain
39	chr9:116101400-116101600	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr9:116101400-116101600	Enhancers	Fetal Brain Female	brain
41	chr9:116101400-116101600	Enhancers	Fetal Intestine Small	intestine
42	chr9:116101400-116101600	Enhancers	Fetal Lung	lung
43	chr9:116101400-116101600	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr9:116101400-116101600	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr9:116101400-116101600	Enhancers	Rectal Smooth Muscle	rectum
46	chr9:116101400-116101600	Enhancers	HMEC	breast
47	chr9:116101400-116101600	Enhancers	HSMM	muscle
48	chr9:116101400-116101600	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr9:116101400-116101600	Enhancers	NHDF-Ad	bronchial
50	chr9:116101400-116101600	Enhancers	NHEK	skin

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