Variant report

Variant	rs57629892
Chromosome Location	chr12:123227535-123227536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs58904977	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60201019	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61098256	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7297797	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7962224	0.88[AFR][1000 genomes]
rs7978294	0.87[AMR][1000 genomes]
rs7980906	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899571	chr12:123215734-123363562	Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123226800-123228000	Enhancers	Primary hematopoietic stem cells	blood
2	chr12:123226800-123228200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr12:123227200-123228000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:123227200-123228200	Enhancers	HepG2	liver
5	chr12:123227200-123229200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr12:123227200-123229600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:123227400-123227800	Enhancers	GM12878-XiMat	blood
8	chr12:123227400-123228200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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