Variant report

Variant	rs576301823
Chromosome Location	chr18:45553222-45553223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45550473..45554043-chr18:45555888..45558338,3	K562	blood:
2	chr18:45550183..45552921-chr18:45552993..45555401,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv274948	chr18:45552290-45557862	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45547200-45555600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr18:45548000-45553600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr18:45548000-45554000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr18:45548600-45553600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr18:45549000-45553400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr18:45549200-45553800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr18:45549200-45554000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr18:45549200-45556000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr18:45549200-45557600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr18:45550400-45553600	Weak transcription	Fetal Heart	heart
11	chr18:45550400-45553800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr18:45550400-45553800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr18:45550400-45553800	Weak transcription	Right Atrium	heart
14	chr18:45550400-45553800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr18:45550400-45554000	Weak transcription	Right Ventricle	heart
16	chr18:45550400-45556400	Weak transcription	Fetal Intestine Small	intestine
17	chr18:45550400-45563400	Weak transcription	Stomach Mucosa	stomach
18	chr18:45550600-45553400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr18:45550600-45553600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr18:45550600-45553600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr18:45550600-45553600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr18:45550600-45553600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr18:45550600-45553800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr18:45550600-45553800	Weak transcription	Brain Substantia Nigra	brain
25	chr18:45550600-45554000	Weak transcription	Fetal Kidney	kidney
26	chr18:45550600-45564000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr18:45550800-45553600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr18:45550800-45553600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr18:45550800-45553800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr18:45550800-45553800	Weak transcription	Placenta	Placenta
31	chr18:45550800-45553800	Weak transcription	Left Ventricle	heart
32	chr18:45550800-45553800	Weak transcription	Ovary	ovary
33	chr18:45550800-45554000	Weak transcription	Brain Hippocampus Middle	brain
34	chr18:45550800-45555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr18:45550800-45557800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr18:45550800-45559600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr18:45550800-45560200	Weak transcription	Gastric	stomach
38	chr18:45550800-45563000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr18:45551000-45553600	Weak transcription	HMEC	breast
40	chr18:45551000-45553800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr18:45551000-45553800	Weak transcription	A549	lung
42	chr18:45551000-45554800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr18:45551000-45554800	Weak transcription	NHEK	skin
44	chr18:45551200-45554400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr18:45551200-45554600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr18:45551200-45561600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr18:45551400-45553600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr18:45551600-45555200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr18:45552000-45553600	Weak transcription	Hela-S3	cervix
50	chr18:45552600-45565200	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links