Variant report

Variant	rs576302322
Chromosome Location	chr1:212688097-212688098
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:212683483..212692182-chr1:212779770..212786326,12	K562	blood:
2	chr1:212663791..212666125-chr1:212687800..212689535,2	K562	blood:
3	chr1:212686498..212689410-chr1:212730977..212733279,2	MCF-7	breast:
4	chr1:212675568..212680156-chr1:212685148..212688870,4	K562	blood:
5	chr1:212686747..212688926-chr1:212729063..212731425,2	K562	blood:
6	chr1:212685711..212688153-chr1:212791617..212793606,2	K562	blood:
7	chr1:212663187..212667039-chr1:212686323..212689300,3	K562	blood:
8	chr1:212683483..212690052-chr1:212778903..212785088,8	K562	blood:
9	chr1:212687310..212689846-chr1:212695967..212699890,3	K562	blood:
10	chr1:212687346..212690563-chr1:212787177..212790270,4	K562	blood:
11	chr1:212686720..212688652-chr1:212736381..212737960,2	K562	blood:
12	chr1:212687936..212690352-chr1:212730094..212732951,2	K562	blood:
13	chr1:212685969..212688191-chr1:212785458..212787889,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM206-4	chr1:212687866-212688157	XLOC_001194
2	lnc-TMEM206-4	chr1:212687891-212688141	NONHSAT009374

No data

Variant related genes	Relation type
ENSG00000264590	Chromatin interaction
ENSG00000260805	Chromatin interaction
ENSG00000162772	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549139	chr1:212332294-212876902	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv1013110	chr1:212555764-212948092	Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
3	nsv535287	chr1:212555764-212948092	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
4	nsv873162	chr1:212610755-212716033	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv527863	chr1:212617423-212700618	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv2757770	chr1:212648143-212843103	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
7	esv2758996	chr1:212648143-212843103	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
8	esv3347790	chr1:212687079-212689577	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212681000-212688600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:212685200-212689000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:212686200-212688200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:212686200-212688400	Enhancers	NH-A	brain
5	chr1:212686400-212688400	Enhancers	Pancreas	Pancrea
6	chr1:212687000-212688400	Enhancers	Lung	lung
7	chr1:212687200-212688200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:212687200-212688600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
9	chr1:212687200-212688600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:212687200-212688600	Bivalent Enhancer	Fetal Thymus	thymus
11	chr1:212687200-212688800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr1:212687400-212688200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr1:212687400-212688200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
14	chr1:212687400-212688400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
15	chr1:212687400-212688400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
16	chr1:212687400-212688600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
17	chr1:212687400-212688600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:212687400-212688600	Bivalent Enhancer	Fetal Brain Male	brain
19	chr1:212687400-212688600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
20	chr1:212687400-212688800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
21	chr1:212687400-212688800	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr1:212687600-212688200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:212687600-212688400	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:212687600-212688400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:212687600-212688400	Flanking Active TSS	Right Ventricle	heart
26	chr1:212687600-212688600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
27	chr1:212687600-212688600	Active TSS	Rectal Smooth Muscle	rectum
28	chr1:212687600-212688800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
29	chr1:212687800-212688200	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr1:212687800-212688200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
31	chr1:212687800-212688400	Active TSS	Colonic Mucosa	Colon
32	chr1:212687800-212688400	Bivalent/Poised TSS	Osteobl	bone
33	chr1:212687800-212688600	Bivalent Enhancer	Primary B cells from cord blood	blood
34	chr1:212687800-212688600	Active TSS	Brain Anterior Caudate	brain
35	chr1:212687800-212688800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
36	chr1:212687800-212688800	Enhancers	Spleen	Spleen
37	chr1:212687800-212689000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr1:212687800-212689000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
39	chr1:212687800-212691800	Weak transcription	Hela-S3	cervix
40	chr1:212687800-212692000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr1:212688000-212688200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr1:212688000-212688200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr1:212688000-212688200	Bivalent/Poised TSS	Adipose Nuclei	Adipose
44	chr1:212688000-212688200	Active TSS	Brain Substantia Nigra	brain
45	chr1:212688000-212688200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
46	chr1:212688000-212688200	Bivalent Enhancer	Fetal Intestine Small	intestine
47	chr1:212688000-212688400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr1:212688000-212688400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr1:212688000-212688400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr1:212688000-212688400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links