Variant report

Variant	rs576303687
Chromosome Location	chr13:61745000-61745001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
4	esv3351090	chr13:61744655-61745060	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61743400-61749800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:61744400-61745400	Enhancers	Brain Substantia Nigra	brain
3	chr13:61744400-61746000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr13:61744600-61745400	Enhancers	Brain Anterior Caudate	brain
5	chr13:61744600-61745400	Enhancers	Brain Hippocampus Middle	brain
6	chr13:61744800-61746000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:61745000-61745400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr13:61745000-61745400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr13:61745000-61745400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr13:61745000-61745400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:61745000-61745400	Enhancers	Brain Angular Gyrus	brain
12	chr13:61745000-61745400	Enhancers	Brain Cingulate Gyrus	brain
13	chr13:61745000-61745400	Enhancers	Left Ventricle	heart
14	chr13:61745000-61745400	Enhancers	Pancreas	Pancrea
15	chr13:61745000-61745400	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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