Variant report

Variant	rs576338128
Chromosome Location	chr1:175140525-175140526
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175139577..175141304-chr1:175158200..175161170,2	K562	blood:
2	chr1:175065484..175067807-chr1:175139999..175142698,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522101	chr1:175109517-175151183	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv528874	chr1:175140319-175151183	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175126800-175141800	Strong transcription	Primary B cells from cord blood	blood
2	chr1:175126800-175148800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr1:175127000-175148400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:175127200-175147800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:175127400-175144200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:175127400-175149400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr1:175127600-175140600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:175129200-175159600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:175130200-175152600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:175130400-175143400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:175135000-175152600	Weak transcription	Aorta	Aorta
12	chr1:175135000-175158400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr1:175135800-175146000	Weak transcription	Colonic Mucosa	Colon
14	chr1:175135800-175146000	Weak transcription	Fetal Intestine Large	intestine
15	chr1:175136000-175141800	Weak transcription	Fetal Muscle Leg	muscle
16	chr1:175136000-175142200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr1:175136000-175145200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr1:175136000-175145400	Weak transcription	Ovary	ovary
19	chr1:175136000-175151600	Weak transcription	Fetal Stomach	stomach
20	chr1:175136000-175157600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr1:175136200-175141800	Weak transcription	Psoas Muscle	Psoas
22	chr1:175136200-175145000	Weak transcription	Fetal Thymus	thymus
23	chr1:175136200-175146800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr1:175136600-175145200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr1:175137400-175145400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr1:175137600-175140600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
27	chr1:175137800-175140600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr1:175137800-175140800	Genic enhancers	Lung	lung
29	chr1:175137800-175140800	Enhancers	Small Intestine	intestine
30	chr1:175138000-175143200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr1:175138000-175148000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr1:175138400-175145200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr1:175138600-175141400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr1:175138800-175141800	Weak transcription	GM12878-XiMat	blood
35	chr1:175139000-175140600	Enhancers	Gastric	stomach
36	chr1:175139000-175140800	Genic enhancers	Primary B cells from peripheral blood	blood
37	chr1:175139200-175140600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr1:175139200-175140600	Genic enhancers	Primary T cells fromperipheralblood	blood
39	chr1:175139200-175141200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr1:175139200-175141600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr1:175139200-175143400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:175139200-175145400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr1:175139400-175140600	Enhancers	Hela-S3	cervix
44	chr1:175139400-175142400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr1:175139400-175148400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:175139600-175140600	Strong transcription	Adipose Nuclei	Adipose
47	chr1:175139600-175140800	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr1:175139600-175141000	Enhancers	HUVEC	blood vessel
49	chr1:175139600-175141200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr1:175139800-175140800	Strong transcription	Fetal Intestine Small	intestine

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