Variant report

Variant	rs576338978
Chromosome Location	chr15:42381278-42381279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42363019..42364718-chr15:42379292..42382030,2	K562	blood:
2	chr15:42370010..42372757-chr15:42379600..42382035,2	K562	blood:

Variant related genes	Relation type
ENSG00000159337	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv471683	chr15:42334375-42502982	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv904131	chr15:42343794-42390223	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv904132	chr15:42343794-42398046	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv832985	chr15:42371482-42564966	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv436201	chr15:42380264-42387429	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42369800-42385000	Weak transcription	Right Atrium	heart
2	chr15:42372800-42383000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:42373400-42384400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr15:42373400-42384400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:42376800-42384400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:42377400-42382400	Weak transcription	Fetal Intestine Large	intestine
7	chr15:42377400-42384800	Weak transcription	Esophagus	oesophagus
8	chr15:42377600-42381400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr15:42377600-42383000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:42377600-42384800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:42377800-42382400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:42377800-42384200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:42378000-42381600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:42378000-42382400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:42378000-42382400	Weak transcription	NHEK	skin
16	chr15:42378200-42382600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:42378200-42382600	Weak transcription	HMEC	breast
18	chr15:42378200-42384800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:42380000-42381400	Enhancers	Hela-S3	cervix
20	chr15:42380000-42383000	Enhancers	Stomach Mucosa	stomach
21	chr15:42380200-42381600	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr15:42380200-42383000	Enhancers	Gastric	stomach
23	chr15:42380800-42381600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:42380800-42381600	Enhancers	Fetal Thymus	thymus
25	chr15:42380800-42382200	Enhancers	Pancreas	Pancrea
26	chr15:42381000-42381800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:42381000-42382200	Enhancers	Fetal Heart	heart
28	chr15:42381000-42382800	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr15:42381000-42383000	Enhancers	Colonic Mucosa	Colon
30	chr15:42381000-42383000	Enhancers	Duodenum Mucosa	Duodenum
31	chr15:42381000-42383400	Bivalent Enhancer	HepG2	liver
32	chr15:42381200-42381800	Enhancers	Primary hematopoietic stem cells	blood

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