Variant report

Variant	rs576339958
Chromosome Location	chr16:81342202-81342203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81323548..81326494-chr16:81339686..81342459,2	MCF-7	breast:
2	chr16:81339016..81342551-chr16:81382542..81385730,3	MCF-7	breast:
3	chr16:81338249..81340093-chr16:81341953..81343949,3	MCF-7	breast:
4	chr16:81333746..81337567-chr16:81339565..81345155,7	MCF-7	breast:
5	chr16:81320082..81322198-chr16:81342184..81344102,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
5	nsv522890	chr16:81341363-81348396	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81309200-81345200	Weak transcription	Brain Hippocampus Middle	brain
2	chr16:81328000-81347000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr16:81328200-81347000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr16:81328600-81347000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr16:81328800-81344800	Weak transcription	Fetal Intestine Small	intestine
6	chr16:81328800-81345200	Weak transcription	Fetal Intestine Large	intestine
7	chr16:81330600-81344800	Weak transcription	Esophagus	oesophagus
8	chr16:81330600-81347200	Weak transcription	Gastric	stomach
9	chr16:81331600-81344800	Weak transcription	Ovary	ovary
10	chr16:81331600-81347000	Weak transcription	Right Ventricle	heart
11	chr16:81331800-81346400	Weak transcription	Brain Anterior Caudate	brain
12	chr16:81332000-81345400	Weak transcription	Thymus	Thymus
13	chr16:81332200-81346400	Weak transcription	Fetal Stomach	stomach
14	chr16:81332400-81344600	Weak transcription	Brain Angular Gyrus	brain
15	chr16:81332400-81346400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr16:81333200-81346400	Weak transcription	Brain Germinal Matrix	brain
17	chr16:81334400-81346600	Weak transcription	Colon Smooth Muscle	Colon
18	chr16:81334600-81347200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr16:81335400-81343600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr16:81335600-81346400	Weak transcription	Primary T cells from cord blood	blood
21	chr16:81337000-81344800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr16:81337600-81347000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr16:81338000-81346400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr16:81338200-81346600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr16:81338400-81347000	Weak transcription	Spleen	Spleen
26	chr16:81338400-81347200	Weak transcription	Primary B cells from cord blood	blood
27	chr16:81338400-81347400	Weak transcription	Aorta	Aorta
28	chr16:81338600-81346600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr16:81338600-81347400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr16:81338800-81346600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr16:81339200-81344800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr16:81339600-81346600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr16:81340000-81346400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr16:81340600-81345000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr16:81340600-81346400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr16:81340800-81347000	Weak transcription	Fetal Muscle Leg	muscle
37	chr16:81341600-81346400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr16:81342000-81346400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr16:81342000-81347000	Weak transcription	Fetal Lung	lung
40	chr16:81342200-81346400	Weak transcription	Primary B cells from peripheral blood	blood
41	chr16:81342200-81346400	Weak transcription	Small Intestine	intestine
42	chr16:81342200-81346600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr16:81342200-81346800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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