Variant report

Variant	rs576356504
Chromosome Location	chr17:38678837-38678838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr17:38678677-38678891	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr17:38677614-38679548	MCF10A-Er-Src	breast:	n/a	n/a
3	MAZ	chr17:38676785-38679269	IMR90	lung:	n/a	chr17:38676819-38676828 chr17:38676817-38676825 chr17:38676821-38676828 chr17:38677127-38677137
4	STAT3	chr17:38678597-38678894	MCF10A-Er-Src	breast:	n/a	n/a
5	EP300	chr17:38678832-38679723	A549	lung:	n/a	n/a
6	CEBPB	chr17:38678562-38678931	IMR90	lung:	n/a	n/a
7	REST	chr17:38677132-38678934	A549	lung:	n/a	chr17:38678520-38678528 chr17:38677137-38677151 chr17:38677174-38677187 chr17:38677903-38677921
8	TCF12	chr17:38676988-38680080	A549	lung:	n/a	chr17:38677183-38677190
9	RCOR1	chr17:38676712-38679035	IMR90	lung:	n/a	n/a
10	FOS	chr17:38678564-38678900	MCF10A-Er-Src	breast:	n/a	n/a
11	ZNF384	chr17:38678621-38678994	K562	blood:	n/a	n/a
12	STAT3	chr17:38678562-38678840	MCF10A-Er-Src	breast:	n/a	n/a
13	FOS	chr17:38678675-38678913	MCF10A-Er-Src	breast:	n/a	n/a
14	POLR2A	chr17:38677768-38679416	MCF10A-Er-Src	breast:	n/a	n/a
15	JUND	chr17:38678788-38678908	K562	blood:	n/a	n/a
16	FOS	chr17:38678559-38678927	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:38678096..38679987-chr17:38715270..38716866,2	MCF-7	breast:
2	chr17:38654640..38659414-chr17:38673768..38679140,6	MCF-7	breast:
3	chr17:38647398..38649761-chr17:38676727..38678938,2	K562	blood:
4	chr17:38639539..38641673-chr17:38677366..38679503,2	K562	blood:
5	chr17:38600130..38602545-chr17:38675909..38679796,4	MCF-7	breast:
6	chr17:38676325..38680650-chr17:38704875..38709448,7	MCF-7	breast:
7	chr17:38677625..38680142-chr17:38696757..38698899,2	MCF-7	breast:
8	chr17:38571667..38573665-chr17:38677679..38680655,2	K562	blood:
9	chr17:38629814..38633387-chr17:38676751..38679736,4	MCF-7	breast:
10	chr17:38675352..38677497-chr17:38677864..38681564,3	MCF-7	breast:
11	chr17:38671928..38674313-chr17:38677766..38679421,2	MCF-7	breast:
12	chr17:38677974..38679924-chr17:38691519..38693332,2	MCF-7	breast:
13	chr17:38673127..38676333-chr17:38678075..38682047,4	K562	blood:

Variant related genes	Relation type
ENSG00000266088	TF binding region
ENSG00000131746	Chromatin interaction
ENSG00000266088	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3369555	chr17:38677926-38681324	Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38668400-38680600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:38671400-38679800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr17:38671600-38679400	Enhancers	Placenta	Placenta
4	chr17:38672200-38679200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr17:38672600-38680800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr17:38672800-38679200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr17:38674000-38679200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:38674200-38681200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr17:38675000-38679400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr17:38675400-38679200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr17:38675400-38680800	Enhancers	HMEC	breast
12	chr17:38675600-38686600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:38675800-38679200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr17:38677000-38679000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr17:38677000-38679200	Enhancers	HSMMtube	muscle
16	chr17:38677000-38679600	Enhancers	Dnd41	blood
17	chr17:38677000-38680800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr17:38677200-38679800	Enhancers	Esophagus	oesophagus
19	chr17:38677400-38679200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr17:38677400-38679200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr17:38677400-38679800	Weak transcription	Primary B cells from cord blood	blood
22	chr17:38677600-38682200	Weak transcription	Spleen	Spleen
23	chr17:38677600-38687800	Weak transcription	Right Ventricle	heart
24	chr17:38677800-38680600	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr17:38678000-38679200	Enhancers	Primary T cells from cord blood	blood
26	chr17:38678000-38683000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr17:38678000-38686800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr17:38678200-38679600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr17:38678200-38679600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr17:38678200-38684200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr17:38678200-38685200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr17:38678400-38679000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr17:38678400-38679000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr17:38678400-38679200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr17:38678400-38679400	Weak transcription	Stomach Mucosa	stomach
36	chr17:38678400-38679600	Enhancers	A549	lung
37	chr17:38678400-38680000	Enhancers	Hela-S3	cervix
38	chr17:38678400-38680400	Weak transcription	NHDF-Ad	bronchial
39	chr17:38678600-38681800	Weak transcription	HSMM	muscle
40	chr17:38678600-38684200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr17:38678800-38679600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr17:38678800-38680200	Genic enhancers	NHEK	skin
43	chr17:38678800-38686800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links