Variant report

Variant	rs57636927
Chromosome Location	chr8:59780830-59780831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10504264	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998693	0.90[EUR][1000 genomes]
rs12679949	0.95[EUR][1000 genomes]
rs16924095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924124	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2122015	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3779999	0.85[ASN][1000 genomes]
rs57569962	0.85[ASN][1000 genomes]
rs61049278	0.85[ASN][1000 genomes]
rs6471753	0.85[ASN][1000 genomes]
rs6999284	0.85[ASN][1000 genomes]
rs7008234	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73243052	0.84[ASN][1000 genomes]
rs73243060	0.85[ASN][1000 genomes]
rs73243092	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73249047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73249050	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7820385	0.85[ASN][1000 genomes]
rs7826293	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs57636927	C9orf84	trans	lymphoblastoid	RTeQTL
rs57636927	FLJ31306	trans	lymphoblastoid	RTeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59764200-59806400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:59771600-59794000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr8:59772600-59794400	Weak transcription	Small Intestine	intestine
5	chr8:59773400-59808200	Weak transcription	Thymus	Thymus
6	chr8:59773800-59785000	Weak transcription	Dnd41	blood
7	chr8:59774000-59781000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:59774600-59789600	Weak transcription	Primary T cells from cord blood	blood
9	chr8:59777800-59788200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:59777800-59795000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr8:59778200-59783200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr8:59778200-59789000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:59779400-59788800	Weak transcription	HUVEC	blood vessel
14	chr8:59779800-59781400	Strong transcription	Fetal Thymus	thymus
15	chr8:59780400-59785200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:59780400-59785800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr8:59780400-59790000	Weak transcription	HSMM	muscle
18	chr8:59780600-59781000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr8:59780600-59785400	Weak transcription	Osteobl	bone
20	chr8:59780600-59791600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr8:59780800-59788800	Weak transcription	Muscle Satellite Cultured Cells	--

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