Variant report

Variant	rs576416941
Chromosome Location	chr8:121235119-121235120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121233564..121236252-chr8:121236921..121239652,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv971348	chr8:121234871-121237165	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121214200-121253400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr8:121215200-121260600	Weak transcription	Fetal Intestine Small	intestine
3	chr8:121217200-121261600	Weak transcription	Fetal Intestine Large	intestine
4	chr8:121222200-121255200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:121224800-121243800	Weak transcription	Placenta	Placenta
6	chr8:121229600-121249000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:121231200-121238800	Weak transcription	Aorta	Aorta
8	chr8:121233000-121235200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:121233400-121242200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:121233600-121238600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:121234000-121239400	Weak transcription	Ovary	ovary
12	chr8:121234000-121239600	Weak transcription	Osteobl	bone
13	chr8:121234200-121236800	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:121234200-121238800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:121234200-121240200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:121234400-121235600	Strong transcription	Fetal Lung	lung
17	chr8:121234600-121235400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr8:121234600-121236800	Strong transcription	Fetal Stomach	stomach
19	chr8:121234800-121240200	Weak transcription	NHDF-Ad	bronchial
20	chr8:121234800-121253800	Weak transcription	Fetal Muscle Leg	muscle
21	chr8:121235000-121239400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links