Variant report

Variant	rs576417223
Chromosome Location	chr6:24358682-24358683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZEB1	chr6:24357372-24358914	HepG2	liver:	n/a	n/a
2	CEBPB	chr6:24357963-24358684	MCF-7	breast:	n/a	chr6:24358379-24358390
3	ZEB1	chr6:24357543-24358786	HepG2	liver:	n/a	n/a
4	MBD4	chr6:24357663-24358711	HepG2	liver:	n/a	n/a
5	POLR2A	chr6:24358663-24358737	MCF-7	breast:	n/a	n/a
6	TEAD4	chr6:24357953-24358714	HepG2	liver:	n/a	n/a
7	MYBL2	chr6:24357877-24358710	HepG2	liver:	n/a	n/a
8	SIN3AK20	chr6:24357420-24358748	MCF-7	breast:	n/a	n/a
9	MAX	chr6:24356810-24358746	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:24358681-24358731	HEK293	kidney:	embryo
2	chr6:24358681-24358731	NH-A	brain:	n/a
3	chr6:24358681-24358731	AG09319	gingival:	n/a
4	chr6:24358681-24358731	AoSMC	blood vessel:	n/a
5	chr6:24358681-24358731	PANC-1	pancreas:	n/a
6	chr6:24358681-24358731	SKMC	muscle:	n/a
7	chr6:24358681-24358731	ovcar-3	ovarian:	n/a
8	chr6:24358681-24358731	HRE	kidney:	n/a
9	chr6:24358681-24358731	T-47D	breast:	n/a
10	chr6:24358681-24358731	HNPCEpiC	eye:	n/a
11	chr6:24358681-24358731	GM12878	blood:	n/a
12	chr6:24358681-24358731	Jurkat	blood:	n/a
13	chr6:24358681-24358731	NHDF-neo	bronchial:	n/a
14	chr6:24358681-24358731	PFSK-1	brain:	n/a
15	chr6:24358681-24358731	BJ	skin:	n/a
16	chr6:24358681-24358731	H1-hESC	embryonic stem cell:	embryo
17	chr6:24358681-24358731	HepG2	liver:	n/a
18	chr6:24358681-24358731	LNCaP	prostate:	n/a
19	chr6:24358681-24358731	HCPEpiC	choroid plexus:	n/a
20	chr6:24358681-24358731	Caco-2	colon:	n/a
21	chr6:24358681-24358731	PrEC	prostate:	n/a
22	chr6:24358681-24358731	HCT-116	colon:	n/a
23	chr6:24358681-24358731	U87	brain:	n/a
24	chr6:24358681-24358731	HCM	heart:	n/a
25	chr6:24358681-24358731	SK-N-SH_RA	brain:	n/a
26	chr6:24358681-24358731	HMEC	breast:	n/a
27	chr6:24358681-24358731	RPTEC	kidney:	n/a
28	chr6:24358681-24358731	HCF	heart:	n/a
29	chr6:24358681-24358731	BE2_C	brain:	n/a
30	chr6:24358681-24358731	SK-N-MC	brain:	n/a
31	chr6:24358681-24358731	HUVEC	blood vessel:	n/a
32	chr6:24358681-24358731	Hela-S3	cervix:	n/a
33	chr6:24358681-24358731	ProgFib	skin:	n/a
34	chr6:24358681-24358731	HIPEpiC	eye:	n/a
35	chr6:24358681-24358731	IMR90	lung:	fetal
36	chr6:24358681-24358731	A549	lung:	n/a
37	chr6:24358681-24358731	NHBE	bronchial:	n/a
38	chr6:24358681-24358731	HRCEpiC	kidney:	n/a
39	chr6:24358681-24358731	K562	blood:	n/a
40	chr6:24358681-24358731	GM06990	blood:	n/a
41	chr6:24358681-24358731	GM12892	blood:	n/a
42	chr6:24358681-24358731	SAEC	small airway:	n/a
43	chr6:24358681-24358731	GM19239	blood:	n/a
44	chr6:24358681-24358731	HAEpiC	amniotic membrane:	n/a
45	chr6:24358681-24358731	AG09309	skin:	n/a
46	chr6:24358681-24358731	GM12891	blood:	n/a
47	chr6:24358681-24358731	MCF10A-Er-Src	breast:	n/a
48	chr6:24358681-24358731	HRPEpiC	eye:	n/a
49	chr6:24358681-24358731	HPAEpiC	pulmonary alveolar:	n/a
50	chr6:24358681-24358731	ECC-1	luminal epithelium:	n/a

No data

Variant related genes	Relation type
DCDC2	TF binding region
DCDC2	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3426241	chr6:24358398-24360946	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3336385	chr6:24358423-24360671	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24353200-24358800	Active TSS	Fetal Kidney	kidney
2	chr6:24354200-24358800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr6:24354800-24358800	Active TSS	A549	lung
4	chr6:24357400-24358800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr6:24357400-24358800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:24357400-24359800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:24357600-24358800	Active TSS	Rectal Smooth Muscle	rectum
8	chr6:24357600-24358800	Enhancers	Spleen	Spleen
9	chr6:24357800-24358800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
10	chr6:24357800-24358800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:24357800-24358800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:24358000-24358800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
13	chr6:24358000-24358800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:24358000-24358800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr6:24358000-24358800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
16	chr6:24358000-24358800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:24358000-24358800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr6:24358000-24358800	Flanking Bivalent TSS/Enh	NHEK	skin
19	chr6:24358200-24358800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:24358200-24358800	Active TSS	Brain Cingulate Gyrus	brain
21	chr6:24358200-24358800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
22	chr6:24358200-24358800	Bivalent Enhancer	Placenta	Placenta
23	chr6:24358200-24358800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
24	chr6:24358200-24358800	Active TSS	Pancreas	Pancrea
25	chr6:24358200-24358800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
26	chr6:24358200-24360000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:24358400-24358800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:24358400-24358800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:24358400-24358800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
30	chr6:24358400-24358800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
31	chr6:24358400-24358800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr6:24358400-24358800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr6:24358400-24358800	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
34	chr6:24358400-24358800	Bivalent Enhancer	Fetal Thymus	thymus
35	chr6:24358400-24358800	Enhancers	Ovary	ovary
36	chr6:24358400-24358800	Bivalent Enhancer	Osteobl	bone
37	chr6:24358400-24359000	Enhancers	Esophagus	oesophagus
38	chr6:24358400-24359800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:24358400-24359800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr6:24358400-24359800	Weak transcription	Right Atrium	heart
41	chr6:24358400-24360000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:24358400-24360000	Weak transcription	Aorta	Aorta
43	chr6:24358400-24360000	Weak transcription	Left Ventricle	heart
44	chr6:24358600-24358800	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr6:24358600-24358800	Bivalent Enhancer	Primary B cells from cord blood	blood
46	chr6:24358600-24358800	Enhancers	Primary B cells from peripheral blood	blood
47	chr6:24358600-24358800	Enhancers	Primary T cells from cord blood	blood
48	chr6:24358600-24358800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
49	chr6:24358600-24358800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:24358600-24358800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

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