Variant report

Variant	rs576420442
Chromosome Location	chr11:10672475-10672476
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10661837..10665351-chr11:10668716..10672933,3	K562	blood:
2	chr11:10560102..10563921-chr11:10672313..10677222,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177112	Chromatin interaction
ENSG00000110315	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv975882	chr11:10671502-10672865	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
2	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:10650400-10678600	Weak transcription	Right Ventricle	heart
4	chr11:10658800-10676600	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:10661200-10673600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:10664200-10678800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:10664400-10675000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:10668200-10673200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:10668200-10673400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:10668400-10673200	Weak transcription	Left Ventricle	heart
11	chr11:10668400-10673800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:10668600-10672600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:10668600-10673400	Weak transcription	Spleen	Spleen
14	chr11:10668600-10674200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:10668600-10674400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:10668800-10673400	Weak transcription	Esophagus	oesophagus
17	chr11:10668800-10674200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr11:10669200-10673400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:10669400-10673200	Weak transcription	Lung	lung
20	chr11:10669400-10673200	Weak transcription	NH-A	brain
21	chr11:10669400-10674400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:10669600-10673400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:10669600-10675600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:10669600-10676800	Weak transcription	Fetal Intestine Large	intestine
25	chr11:10670200-10674600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr11:10670200-10675000	Weak transcription	K562	blood
27	chr11:10670400-10675400	Genic enhancers	Fetal Stomach	stomach
28	chr11:10670800-10673200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:10670800-10673400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:10670800-10673400	Weak transcription	Right Atrium	heart
31	chr11:10670800-10675000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:10670800-10676400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:10671000-10673400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:10671000-10676200	Weak transcription	A549	lung
35	chr11:10671200-10673400	Weak transcription	Ovary	ovary
36	chr11:10671400-10672800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:10671400-10673200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:10671400-10673400	Weak transcription	Aorta	Aorta
39	chr11:10671400-10676000	Enhancers	Brain Anterior Caudate	brain
40	chr11:10671400-10676200	Enhancers	Brain Hippocampus Middle	brain
41	chr11:10671400-10677000	Weak transcription	Fetal Intestine Small	intestine
42	chr11:10671600-10673200	Weak transcription	Colon Smooth Muscle	Colon
43	chr11:10671600-10673200	Weak transcription	NHDF-Ad	bronchial
44	chr11:10671800-10672600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr11:10671800-10673200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:10672000-10672600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:10672000-10672600	Enhancers	Brain Angular Gyrus	brain
48	chr11:10672000-10672600	Enhancers	Placenta	Placenta
49	chr11:10672000-10672800	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr11:10672000-10672800	Enhancers	Brain Substantia Nigra	brain

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