Variant report

Variant	rs57642694
Chromosome Location	chr15:40553266-40553267
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40551082..40553719-chr15:40555234..40558424,3	MCF-7	breast:
2	chr15:40540803..40544639-chr15:40548942..40554143,6	K562	blood:

Variant related genes	Relation type
ENSG00000137843	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1075505	0.86[AMR][1000 genomes]
rs2277564	0.83[EUR][1000 genomes]
rs8037267	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv904095	chr15:40525430-40591570	Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv471240	chr15:40528155-40595627	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv904096	chr15:40550149-40604777	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40546000-40558400	Weak transcription	Brain Anterior Caudate	brain
2	chr15:40546000-40558600	Weak transcription	Brain Angular Gyrus	brain
3	chr15:40546000-40571800	Weak transcription	Right Ventricle	heart
4	chr15:40546200-40568200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:40546800-40559200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:40549600-40554600	Weak transcription	Fetal Intestine Large	intestine
7	chr15:40550000-40568000	Weak transcription	Spleen	Spleen
8	chr15:40550400-40555200	Weak transcription	HSMMtube	muscle
9	chr15:40550400-40566800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:40550800-40558200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:40551200-40553800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:40551200-40554800	Weak transcription	Hela-S3	cervix
13	chr15:40551200-40558800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:40551400-40554800	Weak transcription	Gastric	stomach
15	chr15:40551400-40556600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:40551400-40558800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:40551400-40561600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr15:40551400-40571000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:40551600-40553800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:40551600-40554600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:40551600-40554600	Weak transcription	NHEK	skin
22	chr15:40551600-40554800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:40551600-40554800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:40551600-40555000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:40551600-40555000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:40551600-40555000	Weak transcription	NH-A	brain
27	chr15:40551600-40555200	Weak transcription	Esophagus	oesophagus
28	chr15:40551600-40556600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:40551600-40557000	Weak transcription	Placenta	Placenta
30	chr15:40551600-40557200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:40551600-40557200	Weak transcription	HMEC	breast
32	chr15:40551600-40557600	Weak transcription	Pancreas	Pancrea
33	chr15:40551600-40558200	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr15:40551600-40558600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr15:40551600-40560000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr15:40551600-40561800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr15:40551800-40553800	Weak transcription	Fetal Intestine Small	intestine
38	chr15:40552400-40555200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:40552600-40555000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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