Variant report

Variant	rs57643073
Chromosome Location	chr14:35839893-35839894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35590118..35592539-chr14:35839205..35841309,2	MCF-7	breast:
2	chr14:35761479..35764618-chr14:35836402..35840323,3	MCF-7	breast:
3	chr14:35833474..35838463-chr14:35839143..35843538,8	K562	blood:
4	chr14:35821826..35833396-chr14:35833928..35840799,21	K562	blood:
5	chr14:35839386..35842775-chr14:35870921..35874153,4	K562	blood:
6	chr14:35833202..35845291-chr14:35869974..35876968,23	K562	blood:

Variant related genes	Relation type
ENSG00000092020	Chromatin interaction
ENSG00000100906	Chromatin interaction
ENSG00000100902	Chromatin interaction
ENSG00000100890	Chromatin interaction
ENSG00000258860	Chromatin interaction
ENSG00000258790	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11845494	1.00[AMR][1000 genomes]
rs11850770	0.90[AFR][1000 genomes]
rs11852115	1.00[AMR][1000 genomes]
rs55851011	1.00[AMR][1000 genomes]
rs74043857	1.00[AMR][1000 genomes]
rs74043859	1.00[AMR][1000 genomes]
rs74043868	1.00[AMR][1000 genomes]
rs74043871	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
3	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
4	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv518090	chr14:35802483-35840241	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv528501	chr14:35825436-35840678	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35821600-35843800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:35834200-35840000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr14:35834200-35840200	Enhancers	Primary hematopoietic stem cells	blood
4	chr14:35834400-35840200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr14:35835600-35840400	Enhancers	Primary B cells from cord blood	blood
6	chr14:35837000-35843400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:35837400-35852400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:35837600-35840000	Enhancers	Fetal Thymus	thymus
9	chr14:35837800-35840200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr14:35837800-35843200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:35838000-35840200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr14:35838000-35840200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:35838200-35840000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr14:35838400-35842800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:35838400-35843200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:35838400-35843600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:35838600-35840200	Enhancers	Esophagus	oesophagus
18	chr14:35838600-35840400	Enhancers	HMEC	breast
19	chr14:35838600-35843200	Weak transcription	Osteobl	bone
20	chr14:35838600-35843600	Weak transcription	NH-A	brain
21	chr14:35838600-35843800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:35838800-35847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:35839000-35843400	Weak transcription	NHDF-Ad	bronchial
24	chr14:35839000-35843800	Weak transcription	Brain Anterior Caudate	brain
25	chr14:35839200-35840000	ZNF genes & repeats	GM12878-XiMat	blood
26	chr14:35839200-35840000	Enhancers	NHEK	skin
27	chr14:35839200-35840200	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr14:35839200-35841800	Weak transcription	Right Ventricle	heart
29	chr14:35839200-35843800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:35839400-35840000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:35839600-35842200	Weak transcription	Thymus	Thymus
32	chr14:35839600-35843200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr14:35839600-35843600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr14:35839600-35845000	Weak transcription	Spleen	Spleen
35	chr14:35839600-35852400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr14:35839800-35841600	Weak transcription	Hela-S3	cervix
37	chr14:35839800-35843200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:35839800-35843400	Weak transcription	HUVEC	blood vessel
39	chr14:35839800-35843400	Weak transcription	K562	blood

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