Variant report

Variant	rs576461681
Chromosome Location	chr17:45213305-45213306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:45213139..45213977-chr2:133022711..133023395,2	MCF-7	breast:
2	chr17:45211653..45214560-chr17:45231641..45234372,2	MCF-7	breast:
3	chr17:45213142..45213821-chr2:133022688..133023208,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYL4-2	chr17:45213289-45214095	ENSG00000249938

Variant related genes	Relation type
ENSG00000004897	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv833467	chr17:45063935-45252624	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv2760450	chr17:45130777-45225222	Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv908563	chr17:45158537-45230311	ZNF genes & repeats Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv962332	chr17:45212872-45214587	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1796833	chr17:45212898-45244822	Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv19172	chr17:45212900-45214698	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv7866	chr17:45213029-45213675	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3346798	chr17:45213074-45213692	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv3389305	chr17:45213086-45213674	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv3400089	chr17:45213111-45213637	ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv3326821	chr17:45213119-45213663	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv3513827	chr17:45213138-45213600	ZNF genes & repeats Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv3513828	chr17:45213138-45213600	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv3430245	chr17:45213160-45213588	Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv3449212	chr17:45213178-45213556	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45194800-45214400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:45194800-45234200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr17:45206400-45215200	Weak transcription	Brain Germinal Matrix	brain
4	chr17:45210400-45218600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr17:45212600-45214600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr17:45212600-45214600	Weak transcription	Fetal Brain Female	brain
7	chr17:45212600-45214800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr17:45212800-45213400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr17:45212800-45213400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
10	chr17:45212800-45213400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr17:45212800-45213400	ZNF genes & repeats	Fetal Thymus	thymus
12	chr17:45212800-45213400	ZNF genes & repeats	NHDF-Ad	bronchial
13	chr17:45212800-45213400	ZNF genes & repeats	NHLF	lung
14	chr17:45212800-45213400	ZNF genes & repeats	Osteobl	bone
15	chr17:45212800-45214800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
16	chr17:45212800-45214800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
17	chr17:45212800-45214800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr17:45212800-45214800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr17:45212800-45214800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
20	chr17:45212800-45214800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr17:45212800-45214800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr17:45212800-45214800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
23	chr17:45212800-45214800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
24	chr17:45212800-45214800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
25	chr17:45212800-45214800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr17:45212800-45214800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
27	chr17:45212800-45214800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
28	chr17:45212800-45214800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
29	chr17:45212800-45214800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr17:45212800-45214800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr17:45212800-45214800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
32	chr17:45212800-45214800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr17:45212800-45214800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr17:45212800-45214800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr17:45212800-45214800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
36	chr17:45212800-45214800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
37	chr17:45212800-45214800	ZNF genes & repeats	Primary B cells from cord blood	blood
38	chr17:45212800-45214800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
39	chr17:45212800-45214800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
40	chr17:45212800-45214800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
41	chr17:45212800-45214800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
42	chr17:45212800-45214800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
43	chr17:45212800-45214800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
44	chr17:45212800-45214800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
45	chr17:45212800-45214800	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
46	chr17:45212800-45214800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
47	chr17:45212800-45214800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
48	chr17:45212800-45214800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr17:45212800-45214800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
50	chr17:45212800-45214800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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