Variant report

Variant	rs57646536
Chromosome Location	chr14:24898135-24898136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr14:24895865-24900331	HepG2	liver:	n/a	chr14:24898793-24898803

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24833553..24839988-chr14:24894553..24902357,9	K562	blood:
2	chr14:24787037..24788840-chr14:24897409..24899159,2	K562	blood:
3	chr14:24710331..24713124-chr14:24894765..24900704,5	MCF-7	breast:
4	chr14:24833707..24839988-chr14:24896546..24902736,10	K562	blood:
5	chr14:24816528..24849574-chr14:24893305..24914155,145	MCF-7	breast:
6	chr14:24789439..24822082-chr14:24898039..24913135,99	MCF-7	breast:
7	chr14:24857849..24868599-chr14:24892485..24903992,27	MCF-7	breast:
8	chr14:24791358..24808812-chr14:24895309..24913599,55	K562	blood:
9	chr14:24827418..24850855-chr14:24894884..24913772,127	MCF-7	breast:
10	chr14:24781460..24810019-chr14:24892340..24914262,110	MCF-7	breast:
11	chr14:24845008..24848281-chr14:24897427..24900354,3	K562	blood:
12	chr14:24779448..24783163-chr14:24897934..24900807,3	MCF-7	breast:
13	chr14:24863920..24868653-chr14:24896299..24901214,6	MCF-7	breast:
14	chr14:24609424..24612056-chr14:24897977..24900717,2	MCF-7	breast:
15	chr14:24711225..24713495-chr14:24896859..24899429,2	K562	blood:
16	chr14:24796459..24799989-chr14:24897944..24901736,5	K562	blood:

No data

Variant related genes	Relation type
KHNYN	TF binding region
ENSG00000213903	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000258973	Chromatin interaction
ENSG00000129465	Chromatin interaction
ENSG00000136305	Chromatin interaction
ENSG00000205978	Chromatin interaction
ENSG00000092330	Chromatin interaction
ENSG00000100908	Chromatin interaction
ENSG00000207141	Chromatin interaction
ENSG00000100968	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1884366	1.00[EUR][1000 genomes]
rs1950502	1.00[EUR][1000 genomes]
rs55970272	1.00[EUR][1000 genomes]
rs56003088	1.00[EUR][1000 genomes]
rs56126054	1.00[EUR][1000 genomes]
rs56314918	1.00[EUR][1000 genomes]
rs56377037	1.00[EUR][1000 genomes]
rs74036634	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24892200-24898200	Weak transcription	GM12878-XiMat	blood
2	chr14:24892600-24898200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:24892800-24898400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:24893000-24898600	Enhancers	Fetal Intestine Large	intestine
5	chr14:24893400-24898400	Enhancers	Liver	Liver
6	chr14:24894000-24898400	Enhancers	Fetal Intestine Small	intestine
7	chr14:24894400-24898400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr14:24894400-24898400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:24894400-24898400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:24894400-24898800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr14:24894400-24898800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr14:24894600-24898400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr14:24894600-24898400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:24894600-24898600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr14:24894600-24898600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr14:24894600-24898600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr14:24894600-24898600	Weak transcription	Small Intestine	intestine
18	chr14:24894800-24898200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:24894800-24898200	Weak transcription	Left Ventricle	heart
20	chr14:24894800-24898400	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr14:24894800-24898600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:24894800-24898600	Weak transcription	Ovary	ovary
23	chr14:24895000-24898400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:24895000-24898600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:24895200-24898400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:24895400-24898400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:24895600-24898400	Weak transcription	NH-A	brain
28	chr14:24895600-24898400	Weak transcription	NHLF	lung
29	chr14:24895600-24898600	Weak transcription	HSMMtube	muscle
30	chr14:24895800-24898400	Enhancers	Primary T cells fromperipheralblood	blood
31	chr14:24895800-24898400	Enhancers	Gastric	stomach
32	chr14:24895800-24898600	Enhancers	Pancreas	Pancrea
33	chr14:24895800-24898800	Enhancers	Primary hematopoietic stem cells	blood
34	chr14:24896000-24898200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:24896000-24898400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr14:24896000-24898400	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr14:24896000-24898400	Weak transcription	NHDF-Ad	bronchial
38	chr14:24896000-24898400	Weak transcription	Osteobl	bone
39	chr14:24896000-24898800	Enhancers	Fetal Thymus	thymus
40	chr14:24896000-24898800	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr14:24896200-24898200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr14:24896200-24898400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr14:24896200-24898400	Weak transcription	HSMM	muscle
44	chr14:24896200-24898600	Enhancers	Primary B cells from cord blood	blood
45	chr14:24896200-24898800	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr14:24896400-24898200	Weak transcription	Hela-S3	cervix
47	chr14:24896400-24898400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr14:24896400-24898400	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr14:24896400-24898600	Enhancers	Fetal Muscle Trunk	muscle
50	chr14:24896600-24898200	Weak transcription	K562	blood

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