Variant report

Variant	rs576468649
Chromosome Location	chr14:24776546-24776547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr14:24776483-24777679	HepG2	liver:	n/a	chr14:24777192-24777207 chr14:24777224-24777239
2	NFIC	chr14:24776417-24777981	HepG2	liver:	n/a	n/a
3	HEY1	chr14:24776269-24777700	HepG2	liver:	n/a	n/a
4	HDAC2	chr14:24776399-24777704	HepG2	liver:	n/a	n/a
5	POLR2A	chr14:24776350-24777352	GM12892	blood:	n/a	n/a
6	POLR2A	chr14:24776231-24777986	HepG2	liver:	n/a	n/a
7	MYBL2	chr14:24776234-24777907	HepG2	liver:	n/a	n/a
8	NFIC	chr14:24776350-24777969	HepG2	liver:	n/a	n/a
9	JUND	chr14:24776460-24777806	HepG2	liver:	n/a	n/a
10	POLR2A	chr14:24776425-24777820	Hela-S3	cervix:	n/a	n/a
11	HNF4A	chr14:24776545-24777675	HepG2	liver:	n/a	chr14:24777192-24777207 chr14:24777224-24777239
12	POLR2A	chr14:24776291-24777963	HepG2	liver:	n/a	n/a
13	FOSL2	chr14:24776346-24777953	HepG2	liver:	n/a	n/a
14	YY1	chr14:24776415-24777761	HepG2	liver:	n/a	n/a
15	HNF4A	chr14:24776505-24777701	HepG2	liver:	n/a	chr14:24777192-24777207 chr14:24777224-24777239
16	POLR2A	chr14:24776416-24777101	K562	blood:	n/a	n/a
17	HNF4G	chr14:24776199-24777936	HepG2	liver:	n/a	n/a
18	MBD4	chr14:24775819-24778159	HepG2	liver:	n/a	n/a
19	CTCF	chr14:24776420-24776570	AoAF	blood vessel:	n/a	n/a
20	EP300	chr14:24776471-24777805	HepG2	liver:	n/a	n/a
21	POLR2A	chr14:24776387-24776781	GM12891	blood:	n/a	n/a
22	TEAD4	chr14:24776401-24778070	HepG2	liver:	n/a	n/a
23	POLR2A	chr14:24776297-24778107	GM12892	blood:	n/a	n/a
24	HNF4G	chr14:24776244-24777775	HepG2	liver:	n/a	n/a
25	POLR2A	chr14:24776289-24776803	SK-N-MC	brain:	n/a	n/a
26	HEY1	chr14:24776213-24777652	HepG2	liver:	n/a	n/a
27	POLR2A	chr14:24776233-24777703	HepG2	liver:	n/a	n/a
28	POLR2A	chr14:24773216-24777955	HepG2	liver:	n/a	n/a
29	MYBL2	chr14:24775979-24778584	HepG2	liver:	n/a	n/a
30	MBD4	chr14:24775751-24778062	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:24775299..24777826-chr14:24904340..24907258,3	MCF-7	breast:
2	chr14:24765570..24768951-chr14:24773362..24777339,4	K562	blood:
3	chr14:24774171..24777503-chr14:24780795..24784046,4	K562	blood:
4	chr14:24681591..24684402-chr14:24776273..24778851,2	K562	blood:

Variant related genes	Relation type
LTB4R	TF binding region
ENSG00000272658	TF binding region
LTB4R2	TF binding region
CIDEB	TF binding region
ENSG00000100441	Chromatin interaction
ENSG00000254505	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000213903	Chromatin interaction
ENSG00000254692	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901499	chr14:24765622-24787588	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	n/a
4	nsv901500	chr14:24765622-24793762	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	n/a
5	nsv564058	chr14:24771285-24786976	Flanking Active TSS Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	n/a
6	nsv901501	chr14:24771285-24793762	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	n/a
7	nsv564059	chr14:24776401-24796813	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv564060	chr14:24776401-24809795	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24770200-24777000	Strong transcription	Primary T cells fromperipheralblood	blood
2	chr14:24770200-24778600	Strong transcription	Fetal Stomach	stomach
3	chr14:24770200-24779400	Weak transcription	Right Atrium	heart
4	chr14:24770400-24777000	Strong transcription	Brain Cingulate Gyrus	brain
5	chr14:24770400-24778800	Weak transcription	Fetal Heart	heart
6	chr14:24770400-24782000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:24770600-24776600	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr14:24770600-24776600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:24770600-24776600	Strong transcription	Duodenum Smooth Muscle	Duodenum
10	chr14:24770600-24776800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr14:24770600-24776800	Strong transcription	Brain Germinal Matrix	brain
12	chr14:24770600-24777000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:24770600-24777000	Strong transcription	Primary B cells from peripheral blood	blood
14	chr14:24770600-24777000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:24770600-24777000	Strong transcription	Ovary	ovary
16	chr14:24770600-24777000	Strong transcription	HMEC	breast
17	chr14:24770600-24777200	Strong transcription	Brain Hippocampus Middle	brain
18	chr14:24770600-24777200	Strong transcription	Fetal Muscle Leg	muscle
19	chr14:24770600-24777400	Strong transcription	Colon Smooth Muscle	Colon
20	chr14:24770600-24778000	Strong transcription	Thymus	Thymus
21	chr14:24770600-24781800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:24770600-24781800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:24770800-24776600	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr14:24770800-24776600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:24770800-24776600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr14:24770800-24776600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:24770800-24776600	Strong transcription	Brain Anterior Caudate	brain
28	chr14:24770800-24776600	Strong transcription	Left Ventricle	heart
29	chr14:24770800-24776800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr14:24770800-24776800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr14:24770800-24776800	Strong transcription	Brain Angular Gyrus	brain
32	chr14:24770800-24776800	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr14:24770800-24776800	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr14:24770800-24777000	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr14:24770800-24777000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:24770800-24777000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr14:24770800-24777000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:24770800-24777000	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr14:24770800-24777000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr14:24770800-24777000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr14:24770800-24777000	Strong transcription	Adipose Nuclei	Adipose
42	chr14:24770800-24777000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr14:24770800-24777200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr14:24770800-24777200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr14:24770800-24777200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr14:24770800-24777200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr14:24770800-24777200	Strong transcription	Right Ventricle	heart
48	chr14:24770800-24777800	Strong transcription	Esophagus	oesophagus
49	chr14:24770800-24779000	Strong transcription	NHLF	lung
50	chr14:24770800-24779200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links