Variant report

Variant	rs576477706
Chromosome Location	chr1:210639674-210639675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:210639076-210639685	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:210638414..210639957-chr1:210641526..210644422,2	K562	blood:
2	chr1:210628178..210631075-chr1:210639085..210641802,2	K562	blood:
3	chr1:210544521..210546591-chr1:210638749..210641083,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270936	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4376	chr1:210627620-210672326	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2497060	chr1:210638608-210640022	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:210614600-210641200	Weak transcription	Gastric	stomach
3	chr1:210626200-210650000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:210628400-210640800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:210630000-210641200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:210630200-210641400	Weak transcription	Liver	Liver
7	chr1:210631000-210644200	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:210631000-210653800	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:210631200-210640200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:210635800-210639800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:210636000-210641000	Weak transcription	Ovary	ovary
12	chr1:210636400-210646000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr1:210637200-210640800	Weak transcription	Right Ventricle	heart
14	chr1:210637400-210640600	Weak transcription	Spleen	Spleen
15	chr1:210637800-210639800	Strong transcription	HSMMtube	muscle
16	chr1:210637800-210640000	Strong transcription	Left Ventricle	heart
17	chr1:210638000-210641200	Strong transcription	HSMM	muscle
18	chr1:210638200-210642400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:210638400-210644400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:210638800-210640400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:210639400-210668200	Weak transcription	Primary T cells from cord blood	blood
22	chr1:210639600-210640000	Strong transcription	Aorta	Aorta

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