Variant report

Variant	rs576510621
Chromosome Location	chr5:114731680-114731681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr5:114731662-114732210	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000249026	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv2757132	chr5:114697260-114737583	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2759370	chr5:114697260-114737583	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv3374677	chr5:114730653-114732626	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
6	esv2481947	chr5:114730681-114732326	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
7	esv9023	chr5:114731068-114731880	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
8	esv3509227	chr5:114731186-114731719	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
9	esv3469746	chr5:114731191-114731704	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
10	esv3469744	chr5:114731211-114731711	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
11	esv3509225	chr5:114731212-114731744	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
12	esv3509223	chr5:114731221-114731713	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
13	esv3702	chr5:114731223-114731709	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
14	esv3509228	chr5:114731238-114731685	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
15	esv3469745	chr5:114731252-114731697	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
16	esv3469747	chr5:114731254-114731703	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
17	esv3509229	chr5:114731258-114731685	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
18	esv3509224	chr5:114731275-114731681	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
19	esv3471333	chr5:114731598-114739727	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	esv3520590	chr5:114731610-114739722	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	esv3471334	chr5:114731612-114739723	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	esv3520591	chr5:114731612-114739723	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114729000-114731800	Weak transcription	Osteobl	bone
2	chr5:114729200-114732000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr5:114729400-114731800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:114729400-114734200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:114729600-114737000	Weak transcription	NHLF	lung
6	chr5:114730000-114732000	Weak transcription	NHDF-Ad	bronchial
7	chr5:114730000-114737800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:114731000-114731800	Enhancers	Gastric	stomach
9	chr5:114731200-114731800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr5:114731200-114738000	Weak transcription	Lung	lung

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