Variant report

Variant	rs576523655
Chromosome Location	chr15:74643849-74643850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv984091	chr15:74640375-74659005	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv18862	chr15:74642778-74659579	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74612000-74657800	Weak transcription	Right Atrium	heart
2	chr15:74640800-74647200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:74642200-74653800	Weak transcription	Ovary	ovary
4	chr15:74642800-74644000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr15:74642800-74644400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr15:74642800-74644400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr15:74643000-74644200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr15:74643000-74644400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr15:74643200-74644200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:74643200-74644200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr15:74643400-74644200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr15:74643400-74644200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr15:74643400-74644400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:74643400-74645200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr15:74643600-74644200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:74643600-74644200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:74643600-74644400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr15:74643600-74647200	Weak transcription	Placenta	Placenta
19	chr15:74643800-74644000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr15:74643800-74644200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:74643800-74644200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links