Variant report

Variant	rs57653675
Chromosome Location	chr6:24841220-24841221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs35514577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57596299	1.00[AMR][1000 genomes]
rs57969861	1.00[AMR][1000 genomes]
rs9467324	1.00[AMR][1000 genomes]
rs9467326	1.00[AMR][1000 genomes]
rs9467328	1.00[AMR][1000 genomes]
rs9467332	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv508396	chr6:24779648-24846309	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24777000-24847600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:24777000-24859600	Weak transcription	Psoas Muscle	Psoas
3	chr6:24788800-24848200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:24789200-24842600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:24800000-24843200	Weak transcription	Liver	Liver
6	chr6:24804800-24858200	Weak transcription	Gastric	stomach
7	chr6:24806200-24842400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:24808800-24845600	Weak transcription	Fetal Stomach	stomach
9	chr6:24817800-24854400	Strong transcription	Primary B cells from cord blood	blood
10	chr6:24817800-24855800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:24818600-24855800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:24818800-24856000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr6:24818800-24856400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr6:24822600-24844000	Weak transcription	Fetal Heart	heart
15	chr6:24828000-24842600	Weak transcription	Dnd41	blood
16	chr6:24830400-24855800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:24832400-24859600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:24833000-24857800	Weak transcription	Brain Angular Gyrus	brain
19	chr6:24833200-24845400	Weak transcription	NHDF-Ad	bronchial
20	chr6:24834600-24844400	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:24834600-24851600	Weak transcription	HSMM	muscle
22	chr6:24835400-24843200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:24836000-24857200	Weak transcription	Fetal Brain Female	brain
24	chr6:24836200-24845800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:24836200-24847600	Weak transcription	Left Ventricle	heart
26	chr6:24836600-24844400	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:24837000-24843800	Weak transcription	Right Ventricle	heart
28	chr6:24837000-24855800	Weak transcription	Ovary	ovary
29	chr6:24837800-24848400	Genic enhancers	Primary T cells fromperipheralblood	blood
30	chr6:24837800-24850000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
31	chr6:24837800-24856000	Strong transcription	Fetal Thymus	thymus
32	chr6:24838000-24856400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:24838200-24843200	Strong transcription	Spleen	Spleen
34	chr6:24838200-24854800	Strong transcription	Primary hematopoietic stem cells	blood
35	chr6:24838200-24856000	Strong transcription	Placenta	Placenta
36	chr6:24838200-24856400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:24838400-24843600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:24838400-24849000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr6:24838400-24851800	Strong transcription	Fetal Muscle Trunk	muscle
40	chr6:24838600-24841400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:24838800-24842400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:24838800-24843200	Weak transcription	Brain Substantia Nigra	brain
43	chr6:24838800-24855800	Weak transcription	Adipose Nuclei	Adipose
44	chr6:24839000-24842400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:24839000-24854800	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:24839200-24843200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:24839200-24845600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr6:24839200-24846000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
49	chr6:24839200-24846400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:24839200-24853600	Strong transcription	H9 Cell Line	embryonic stem cell

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