The 2.0 version of rSNPBase

Variant report

Variant rs57654288
Chromosome Location chr19:38078771-38078772
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38032400-38080800 ZNF genes & repeats Liver Liver
2 chr19:38038600-38079600 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
3 chr19:38041200-38079600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr19:38046600-38079600 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
5 chr19:38049200-38079600 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
6 chr19:38051600-38078800 ZNF genes & repeats Fetal Brain Female brain
7 chr19:38065200-38078800 ZNF genes & repeats Colon Smooth Muscle Colon
8 chr19:38068400-38078800 ZNF genes & repeats Primary T helper naive cells fromperipheralblood blood
9 chr19:38068600-38080000 ZNF genes & repeats Ovary ovary
10 chr19:38068600-38080800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
11 chr19:38068800-38079800 ZNF genes & repeats Dnd41 blood
12 chr19:38069200-38079600 ZNF genes & repeats Duodenum Mucosa Duodenum
13 chr19:38069800-38084600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
14 chr19:38070400-38079600 ZNF genes & repeats Fetal Lung lung
15 chr19:38070600-38079600 ZNF genes & repeats Primary T helper memory cells from peripheral blood 1 blood
16 chr19:38071000-38078800 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr19:38071200-38078800 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
18 chr19:38071200-38079600 ZNF genes & repeats Fetal Kidney kidney
19 chr19:38072400-38078800 ZNF genes & repeats Skeletal Muscle Female skeletal muscle
20 chr19:38072400-38084600 Weak transcription H9 Cell Line embryonic stem cell
21 chr19:38073200-38079600 ZNF genes & repeats Brain Substantia Nigra brain
22 chr19:38073800-38078800 ZNF genes & repeats Colonic Mucosa Colon
23 chr19:38074200-38078800 ZNF genes & repeats Skeletal Muscle Male skeletal muscle
24 chr19:38075200-38084600 Weak transcription Fetal Heart heart
25 chr19:38075800-38079000 ZNF genes & repeats Fetal Intestine Small intestine
26 chr19:38076000-38079600 ZNF genes & repeats Adipose Nuclei Adipose
27 chr19:38077200-38084600 Weak transcription Placenta Amnion Placenta Amnion
28 chr19:38077600-38079000 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
29 chr19:38078200-38079200 Weak transcription Primary T helper naive cells from peripheral blood blood
30 chr19:38078200-38079600 Weak transcription Brain Cingulate Gyrus brain
31 chr19:38078200-38081000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr19:38078200-38084400 Weak transcription Stomach Smooth Muscle stomach
33 chr19:38078200-38084600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr19:38078200-38084600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr19:38078400-38079200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr19:38078400-38079200 Weak transcription Pancreas Pancrea
37 chr19:38078400-38080200 Weak transcription HSMMtube muscle
38 chr19:38078600-38079200 Weak transcription Brain Hippocampus Middle brain
39 chr19:38078600-38084600 Weak transcription Thymus Thymus

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Last update: Aug 31, 2015