Variant report

Variant	rs576548564
Chromosome Location	chr5:107991671-107991672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1024076	chr5:107991426-108028223	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107988800-107993600	Enhancers	Hela-S3	cervix
2	chr5:107989400-107992600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:107989400-107992600	Enhancers	NHDF-Ad	bronchial
4	chr5:107989600-107992800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:107990000-108006200	Weak transcription	Fetal Heart	heart
6	chr5:107991000-107991800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:107991200-107991800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:107991400-107992200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:107991400-107992600	Enhancers	NHEK	skin
10	chr5:107991400-107992800	Enhancers	HMEC	breast
11	chr5:107991600-107992000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:107991600-107992200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:107991600-107992200	Enhancers	NH-A	brain
14	chr5:107991600-107992400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:107991600-107992400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:107991600-107992400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:107991600-107992600	Enhancers	NHLF	lung
18	chr5:107991600-107992600	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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