Variant report

Variant	rs576610287
Chromosome Location	chr4:55574465-55574466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:55567098..55569303-chr4:55573075..55575854,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3367952	chr4:55437113-55724644	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1003338	chr4:55566703-55582342	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1012346	chr4:55571312-55584101	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv275029	chr4:55571761-55582463	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1010844	chr4:55573693-55587972	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55545600-55575800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:55557800-55594000	Weak transcription	Aorta	Aorta
3	chr4:55561000-55606600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:55562000-55577200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:55562800-55597400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:55565000-55576000	Weak transcription	Ovary	ovary
7	chr4:55565600-55575000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:55565600-55592800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:55566200-55589600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:55567600-55575400	Weak transcription	Brain Germinal Matrix	brain
11	chr4:55567800-55587200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:55570400-55578600	Weak transcription	Fetal Brain Male	brain
13	chr4:55571000-55580000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:55571200-55575200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr4:55572200-55576000	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:55573200-55575400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr4:55573200-55576200	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr4:55573200-55576600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:55573400-55574600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:55573400-55574600	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr4:55573400-55575000	Strong transcription	NHDF-Ad	bronchial
22	chr4:55573400-55576400	Genic enhancers	Primary hematopoietic stem cells	blood
23	chr4:55573400-55576600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:55573600-55575400	Weak transcription	HUVEC	blood vessel
25	chr4:55573600-55575400	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr4:55573600-55576400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:55573600-55577400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:55573600-55577400	Enhancers	Fetal Thymus	thymus
29	chr4:55573600-55583200	Weak transcription	Brain Substantia Nigra	brain
30	chr4:55573800-55574600	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr4:55573800-55575200	Weak transcription	Thymus	Thymus
32	chr4:55573800-55577600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr4:55574200-55576000	Enhancers	Gastric	stomach
34	chr4:55574200-55576200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:55574200-55576400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr4:55574200-55579000	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr4:55574400-55574600	Strong transcription	Fetal Stomach	stomach
38	chr4:55574400-55575200	Enhancers	Lung	lung
39	chr4:55574400-55578200	Weak transcription	H9 Cell Line	embryonic stem cell

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