Variant report

Variant	rs57663290
Chromosome Location	chr1:158631430-158631431
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10047206	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10047207	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1332693	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1332695	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1332696	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1412661	1.00[AMR][1000 genomes]
rs1412662	1.00[AMR][1000 genomes]
rs16840437	0.81[AMR][1000 genomes]
rs16840443	1.00[AMR][1000 genomes]
rs16840444	0.81[AMR][1000 genomes]
rs16840445	0.91[AMR][1000 genomes]
rs16840446	0.81[AMR][1000 genomes]
rs16840450	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16840452	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16840456	0.81[AMR][1000 genomes]
rs16840458	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2106089	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35121052	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60240422	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60970031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61048005	1.00[AMR][1000 genomes]
rs6666523	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018255	1.00[AMR][1000 genomes]
rs73018260	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018265	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7536211	0.91[AMR][1000 genomes]
rs7544849	1.00[AMR][1000 genomes]
rs7547313	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3491788	chr1:158537183-158725907	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3491789	chr1:158537242-158725858	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv872481	chr1:158625789-158712510	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158629800-158633600	Strong transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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