Variant report

Variant	rs576635290
Chromosome Location	chr5:177643774-177643775
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
4	nsv482872	chr5:177580298-177744381	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	106 gene(s)	inside rSNPs	diseases
5	nsv1021981	chr5:177620372-177825272	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
6	nsv537967	chr5:177620372-177825272	Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
7	nsv1024689	chr5:177638936-177926244	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv537968	chr5:177638936-177926244	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	esv3425423	chr5:177643496-177648394	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177633600-177644000	Genic enhancers	Fetal Intestine Large	intestine
2	chr5:177633800-177644000	Strong transcription	Brain Inferior Temporal Lobe	brain
3	chr5:177634000-177643800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:177634000-177644000	Strong transcription	Rectal Smooth Muscle	rectum
5	chr5:177634000-177650800	Strong transcription	Placenta	Placenta
6	chr5:177634200-177644000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:177634400-177643800	Strong transcription	Colon Smooth Muscle	Colon
8	chr5:177634400-177654200	Strong transcription	Fetal Stomach	stomach
9	chr5:177634600-177644200	Strong transcription	Stomach Smooth Muscle	stomach
10	chr5:177634600-177644400	Strong transcription	Fetal Lung	lung
11	chr5:177634600-177646000	Strong transcription	Thymus	Thymus
12	chr5:177634800-177645800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:177635000-177643800	Strong transcription	Fetal Kidney	kidney
14	chr5:177635000-177644000	Strong transcription	Brain Anterior Caudate	brain
15	chr5:177635000-177647000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:177635000-177650200	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr5:177635000-177650400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:177635000-177650400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:177635000-177650400	Strong transcription	Adipose Nuclei	Adipose
20	chr5:177635200-177643800	Strong transcription	Brain Substantia Nigra	brain
21	chr5:177635200-177643800	Strong transcription	NHEK	skin
22	chr5:177635200-177644000	Strong transcription	Esophagus	oesophagus
23	chr5:177635200-177644000	Strong transcription	Left Ventricle	heart
24	chr5:177635200-177644000	Strong transcription	Ovary	ovary
25	chr5:177635200-177644200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr5:177635200-177644200	Strong transcription	Fetal Thymus	thymus
27	chr5:177635200-177644200	Strong transcription	NHDF-Ad	bronchial
28	chr5:177635200-177644400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:177635200-177644400	Strong transcription	HUVEC	blood vessel
30	chr5:177635200-177644800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:177635200-177645400	Strong transcription	Fetal Brain Female	brain
32	chr5:177635200-177646000	Strong transcription	NH-A	brain
33	chr5:177635400-177643800	Strong transcription	HMEC	breast
34	chr5:177635400-177644000	Strong transcription	NHLF	lung
35	chr5:177635400-177644200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:177635400-177644600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr5:177635400-177644800	Strong transcription	Fetal Muscle Trunk	muscle
38	chr5:177635400-177646200	Strong transcription	Osteobl	bone
39	chr5:177635400-177646400	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr5:177635400-177649200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr5:177635400-177651000	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr5:177635600-177644400	Strong transcription	HSMM	muscle
43	chr5:177635800-177643800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr5:177635800-177644000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr5:177635800-177657000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr5:177636000-177648000	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr5:177636000-177654000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr5:177636400-177644000	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr5:177637000-177644000	Strong transcription	Dnd41	blood
50	chr5:177637200-177644400	Strong transcription	Brain Germinal Matrix	brain

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