Variant report

Variant	rs576640001
Chromosome Location	chr3:51584920-51584921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv997264	chr3:51584056-51689648	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536570	chr3:51584056-51689648	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv999553	chr3:51584056-51696052	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51573800-51594000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:51574000-51586800	Weak transcription	Brain Substantia Nigra	brain
3	chr3:51574000-51590800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:51574000-51593800	Weak transcription	Right Ventricle	heart
5	chr3:51574000-51597000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:51574000-51600600	Weak transcription	Gastric	stomach
7	chr3:51574000-51615400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:51574000-51624800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:51574200-51616400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:51574400-51593200	Weak transcription	Brain Angular Gyrus	brain
11	chr3:51574400-51613800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:51574600-51586000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:51574600-51587400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr3:51574600-51590800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr3:51574600-51593200	Weak transcription	Brain Anterior Caudate	brain
16	chr3:51574600-51593200	Weak transcription	NHLF	lung
17	chr3:51574600-51593400	Weak transcription	HSMMtube	muscle
18	chr3:51574600-51593800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:51574600-51593800	Weak transcription	Left Ventricle	heart
20	chr3:51574600-51594400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:51574600-51600800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:51574600-51601800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr3:51574600-51624600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:51574800-51591000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:51574800-51597600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr3:51574800-51624800	Weak transcription	NH-A	brain
27	chr3:51575000-51587400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:51575000-51597400	Weak transcription	Small Intestine	intestine
29	chr3:51575200-51587600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr3:51575200-51615600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:51575600-51585000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:51575600-51587400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr3:51575600-51593200	Weak transcription	Colon Smooth Muscle	Colon
34	chr3:51576000-51585000	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr3:51576000-51595400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr3:51576200-51593000	Strong transcription	Fetal Stomach	stomach
37	chr3:51576400-51586600	Weak transcription	Fetal Lung	lung
38	chr3:51576400-51593200	Weak transcription	HSMM	muscle
39	chr3:51576400-51597800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr3:51576400-51602000	Weak transcription	Brain Hippocampus Middle	brain
41	chr3:51577200-51597600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr3:51577600-51585200	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr3:51578600-51587600	Weak transcription	Fetal Intestine Large	intestine
44	chr3:51578600-51587600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr3:51578600-51591400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:51578600-51607000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:51578800-51585400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr3:51578800-51587600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:51578800-51593400	Weak transcription	NHDF-Ad	bronchial
50	chr3:51578800-51597400	Weak transcription	Primary hematopoietic stem cells	blood

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