Variant report

Variant	rs57670211
Chromosome Location	chr2:113716483-113716484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13415005	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113714800-113716600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:113715800-113716600	Enhancers	Stomach Mucosa	stomach
3	chr2:113715800-113720600	Weak transcription	Fetal Intestine Small	intestine
4	chr2:113716000-113716600	Enhancers	HMEC	breast
5	chr2:113716200-113716600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:113716200-113716600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr2:113716200-113716600	Enhancers	NH-A	brain
8	chr2:113716200-113716800	Enhancers	Liver	Liver
9	chr2:113716200-113716800	Enhancers	K562	blood
10	chr2:113716200-113717000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:113716200-113717200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:113716400-113716600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr2:113716400-113716600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:113716400-113716600	Enhancers	Fetal Lung	lung
15	chr2:113716400-113716800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr2:113716400-113716800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr2:113716400-113717000	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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