Variant report

Variant	rs57670516
Chromosome Location	chr3:89419645-89419646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1512185	0.80[ASN][1000 genomes]
rs17801001	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17801031	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28623022	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62275015	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62275016	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62275018	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275019	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782527	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6800041	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73137381	0.81[ASN][1000 genomes]
rs73137382	0.81[ASN][1000 genomes]
rs73137384	0.84[ASN][1000 genomes]
rs73137387	0.81[ASN][1000 genomes]
rs73137393	0.81[ASN][1000 genomes]
rs73137395	0.84[ASN][1000 genomes]
rs7615949	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631682	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7645408	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs870898	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs870899	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9832305	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9836340	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9842599	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9844971	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849029	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854073	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860266	0.89[ASN][1000 genomes]
rs9864984	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868782	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1001345	chr3:89368629-89444995	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1000694	chr3:89373820-89453045	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1008018	chr3:89382031-90254063	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536639	chr3:89382031-90254063	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1011402	chr3:89384121-89444995	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv998808	chr3:89385875-89425802	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1007800	chr3:89387089-89420476	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv437790	chr3:89389507-89426589	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv590928	chr3:89389507-89442369	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv870256	chr3:89391047-89421451	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv10290	chr3:89391277-89420095	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1006662	chr3:89394580-89419909	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1010218	chr3:89394580-89420219	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1014916	chr3:89394580-89420476	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1012663	chr3:89394580-89425802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1012824	chr3:89394580-89431445	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv2760812	chr3:89394592-89420488	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv2763745	chr3:89394592-89427509	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1014566	chr3:89394639-89420219	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1009215	chr3:89394639-89420476	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv1002797	chr3:89394689-89419909	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv590936	chr3:89402447-89422139	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
24	nsv590937	chr3:89402447-89426032	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv516852	chr3:89402447-89442369	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv1004891	chr3:89405088-89420476	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
27	nsv1008373	chr3:89405754-89419909	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
28	nsv1008556	chr3:89405754-89420219	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
29	nsv1008481	chr3:89405754-89420476	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
30	nsv590941	chr3:89405754-89422139	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
31	nsv590944	chr3:89405881-89426032	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv999984	chr3:89406933-89419909	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
33	nsv1002355	chr3:89406933-89420219	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
34	nsv1000972	chr3:89406933-89420476	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
35	nsv1000450	chr3:89407039-89420476	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
36	nsv1009652	chr3:89407075-89420476	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
37	nsv1001172	chr3:89407256-89420476	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
38	nsv590947	chr3:89407256-89422139	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
39	nsv590951	chr3:89410319-89422139	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
40	nsv1002605	chr3:89413038-89453045	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89410400-89421200	Weak transcription	Fetal Brain Female	brain
2	chr3:89417800-89433600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:89418000-89421000	Weak transcription	Brain Germinal Matrix	brain

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